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Pou5f1-rs3 Pseudogene Detail
Summary
  • Symbol
    Pou5f1-rs3
  • Name
    POU domain, class 5, transcription factor 1, related sequence 3
  • Synonyms
    Gm2071, Otf3c, Otf3-rs3
Location &
Maps
more
  • Sequence Map
    Chr3:3894344-3895117 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 1.96 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    17
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_101890
 pseudogene Chr3:3894005-3895284 (+)
129S1/SvImJ MGP_129S1SvImJ_G0011997
 pseudogene Chr3:580293-581066 (+)
A/J MGP_AJ_G0011988
 pseudogene Chr3:930372-931145 (+)
AKR/J MGP_AKRJ_G0011947
 pseudogene Chr3:702680-703453 (+)
BALB/cJ MGP_BALBcJ_G0011966
 pseudogene Chr3:662019-662792 (+)
C3H/HeJ MGP_C3HHeJ_G0011843
 pseudogene Chr3:941282-942055 (+)
C57BL/6NJ MGP_C57BL6NJ_G0012264
 pseudogene Chr3:957199-957972 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0010717
 pseudogene Chr3:427819-428597 (+)
CAST/EiJ MGP_CASTEiJ_G0011624
 pseudogene Chr3:987308-988082 (+)
CBA/J MGP_CBAJ_G0011816
 pseudogene Chr3:619320-620093 (+)
DBA/2J MGP_DBA2J_G0011870
 pseudogene Chr3:577216-577989 (+)
FVB/NJ MGP_FVBNJ_G0011878
 pseudogene Chr3:548183-548956 (+)
LP/J MGP_LPJ_G0011939
 pseudogene Chr3:918910-919683 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0011878
 pseudogene Chr3:948970-949743 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0012269
 pseudogene Chr3:562379-563152 (+)
PWK/PhJ MGP_PWKPhJ_G0011474
 pseudogene Chr3:895127-895901 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0011646
 pseudogene Chr3:567235-568008 (+)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103245 Ensembl Gene Model | MGI Sequence Detail 774 C57BL/6J ±  kb
transcript ENSMUST00000193335 Ensembl | MGI Sequence Detail 774 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGD-MRK-13073, MGD-MRK-18716, MGD-MRK-19412, MGI:3780238
References
more
  • Summaries
    All 7
  • Earliest
    J:11320 Siracusa LD, et al., Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Genomics. 1991 Jun;10(2):313-26
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory