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Pou5f1-rs6 Pseudogene Detail
Summary
  • Symbol
    Pou5f1-rs6
  • Name
    POU domain, class 5, transcription factor 1, related sequence 6
  • Synonyms
    Gm18927, Otf3f, Otf3-rs6
Location &
Maps
more
  • Sequence Map
    Chr14:5363820-5364135 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 7.08 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    129 from dbSNP Build 142
  • Strain Annotations
    17
  • RFLP
    3
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_101887
 pseudogene Chr14:5363410-5364138 (-)
129S1/SvImJ ENSMUSG00200025697
 pseudogene Chr14:1960707-1961022 (-)
A/J ENSMUSG00195030504
 pseudogene Chr14:2873446-2873761 (-)
AKR/J ENSMUSG00220023434
 pseudogene Chr14:1964324-1964639 (-)
BALB/cJ ENSMUSG00180025257
 pseudogene Chr14:2151642-2151954 (-)
C3H/HeJ ENSMUSG00175009765
 pseudogene Chr14:2118263-2118578 (-)
C57BL/6NJ ENSMUSG00215024693
 pseudogene Chr14:2396862-2397177 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005031541
 pseudogene Chr14:2152946-2153261 (-)
CBA/J ENSMUSG00210038260
 pseudogene Chr14:2339782-2340097 (-)
DBA/2J ENSMUSG00185037807
 pseudogene Chr14:2345315-2345630 (-)
FVB/NJ ENSMUSG00205027368
 pseudogene Chr14:2354906-2355221 (-)
JF1/MsJ ENSUMUG00000026989
 pseudogene Chr14:2343921-2344236 (-)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190036545
 pseudogene Chr14:2396678-2396993 (-)
NZO/HlLtJ ENSMUSG00225037242
 pseudogene Chr14:2820715-2821027 (-)
PWK/PhJ ENSLUMG00010033739
 pseudogene Chr14:23677954-23678269 (-)
SPRET/EiJ ENSMSPG00010002667
 pseudogene Chr14:2493662-2493977 (-)
WSB/EiJ ENSIUOG00005025642
 pseudogene Chr14:2199710-2200025 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000114296 Ensembl Gene Model | MGI Sequence Detail 316 C57BL/6J ±  kb
transcript ENSMUST00000225472 Ensembl | MGI Sequence Detail 316 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGD-MRK-13076, MGD-MRK-18713, MGD-MRK-19415, MGI:5011112
References
more
  • Summaries
    All 8
  • Earliest
    J:11320 Siracusa LD, et al., Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Genomics. 1991 Jun;10(2):313-26
  • Latest
    J:224363 Scarola M, et al., Epigenetic silencing of Oct4 by a complex containing SUV39H1 and Oct4 pseudogene lncRNA. Nat Commun. 2015;6:7631
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory