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Cdin1 Gene Detail
Summary
  • Symbol
    Cdin1
  • Name
    CDAN1 interacting nuclease 1
  • Synonyms
    BC052040, MGC:62402
  • Feature Type
    protein coding gene
  • IDs
    MGI:3026886
    NCBI Gene: 399568
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:115412197-115609249 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 58.18 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4218 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026886
 protein coding gene Chr2:115411388-115609263 (+)
129S1/SvImJ ENSMUSG00200043080
 protein coding gene Chr2:112312704-112509649 (+)
A/J ENSMUSG00195023300
 protein coding gene Chr2:112403573-112601800 (+)
AKR/J ENSMUSG00220040486
 protein coding gene Chr2:112257241-112455975 (+)
BALB/cJ ENSMUSG00180044097
 protein coding gene Chr2:112198735-112396316 (+)
C3H/HeJ ENSMUSG00175024834
 protein coding gene Chr2:112628944-112825132 (+)
C57BL/6NJ ENSMUSG00215025474
 protein coding gene Chr2:112318813-112515924 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024106
 protein coding gene Chr2:108465267-108666849 (+)
CAST/EiJ ENSTCUG00005015310
 protein coding gene Chr2:111547665-111750011 (+)
CBA/J ENSMUSG00210007055
 protein coding gene Chr2:112470065-112666228 (+)
DBA/2J ENSMUSG00185045384
 protein coding gene Chr2:112195032-112393106 (+)
FVB/NJ ENSMUSG00205041506
 protein coding gene Chr2:111405675-111604328 (+)
JF1/MsJ ENSUMUG00000010636
 protein coding gene Chr2:112019774-112216698 (+)
LP/J ENSMUSG00230014498
 protein coding gene Chr2:113974803-114171769 (+)
NOD/ShiLtJ ENSMUSG00190038144
 protein coding gene Chr2:112391520-112590032 (+)
NZO/HlLtJ ENSMUSG00225012242
 protein coding gene Chr2:121883238-122081183 (+)
PWK/PhJ ENSLUMG00010002908
 protein coding gene Chr2:111965896-112163830 (+)
SPRET/EiJ ENSMSPG00010030578
 protein coding gene Chr2:114236170-114433711 (+)
WSB/EiJ ENSIUOG00005026057
 protein coding gene Chr2:112113346-112310551 (+)



Homology
more
  • Human Ortholog
    CDIN1, CDAN1 interacting nuclease 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDIN1, CDAN1 interacting nuclease 1
  • Synonyms
    C15orf41, HH114
  • Links
    NCBI Gene ID: 84529
    UniProt: Q9Y2V0

  • Chr Location
    15q14; chr15:36579626-36810248 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CDIN1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    1 images
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show normal blastocyst formation but exhibit complete embryonic lethality by E7.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    692
  • Tissues
    24
  • cDNA Data
    12
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000040282 Ensembl Gene Model | MGI Sequence Detail 197053 C57BL/6J ±  kb
    transcript ENSMUST00000166472 Ensembl | MGI Sequence Detail 2770 Not Applicable  
    polypeptide ENSMUSP00000126772 Ensembl | MGI Sequence Detail 287 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 12
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:6436678
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 2
      Gene Ontology 5
      Phenotypes 17
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory