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Focad Gene Detail
Summary
  • Symbol
    Focad
  • Name
    focadhesin
  • Synonyms
    BC057079, mKIAA1797
  • Feature Type
    protein coding gene
  • IDs
    MGI:2676921
    NCBI Gene: 230393
  • Alliance
    genome feature page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:88012866-88329248 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 41.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    7553 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2676921
 protein coding gene Chr4:88012858-88329248 (+)
129S1/SvImJ ENSMUSG00200009875
 protein coding gene Chr4:83010395-83330235 (+)
A/J ENSMUSG00195008279
 protein coding gene Chr4:83569001-83888902 (+)
AKR/J ENSMUSG00220019595
 protein coding gene Chr4:82939106-83263156 (+)
BALB/cJ ENSMUSG00180005582
 protein coding gene Chr4:82533849-82843173 (+)
C3H/HeJ ENSMUSG00175007687
 protein coding gene Chr4:83494961-83804284 (+)
C57BL/6NJ ENSMUSG00215011338
 protein coding gene Chr4:83384361-83706091 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026139
 protein coding gene Chr4:80901199-81195187 (+)
CAST/EiJ ENSTCUG00005018497
 protein coding gene Chr4:82854954-83149078 (+)
CBA/J ENSMUSG00210016171
 protein coding gene Chr4:83069965-83379292 (+)
DBA/2J ENSMUSG00185002423
 protein coding gene Chr4:83666950-83977598 (+)
FVB/NJ ENSMUSG00205012521
 protein coding gene Chr4:81903565-82225708 (+)
JF1/MsJ ENSUMUG00000002172
 protein coding gene Chr4:83909563-84207985 (+)
LP/J ENSMUSG00230014494
 protein coding gene Chr4:87080618-87400469 (+)
NOD/ShiLtJ ENSMUSG00190015695
 protein coding gene Chr4:82466214-82786257 (+)
NZO/HlLtJ ENSMUSG00225005011
 protein coding gene Chr4:92188218-92517345 (+)
PWK/PhJ ENSLUMG00010003145
 protein coding gene Chr4:81756268-82053847 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005012265
 protein coding gene Chr4:82872119-83175152 (+)



Homology
more
  • Human Ortholog
    FOCAD, focadhesin
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FOCAD, focadhesin
  • Synonyms
    KIAA1797, SCOLIV
  • Links
    NCBI Gene ID: 54914
    UniProt: Q5VW36

  • Chr Location
    9p21.3; chr9:20655625-20996161 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    604
  • Tissues
    4
  • cDNA Data
    59
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000038368 Ensembl Gene Model | MGI Sequence Detail 316383 C57BL/6J ±  kb
    transcript ENSMUST00000097992 Ensembl | MGI Sequence Detail 5791 Not Applicable  
    polypeptide ENSMUSP00000095602 Ensembl | MGI Sequence Detail 1798 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 60
      cDNA 60
      Antibodies 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 3
      Gene Ontology 5
      Phenotypes 14
    • Earliest
      J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory