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Mir9-1 Gene Detail
Summary
  • Symbol
    Mir9-1
  • Name
    microRNA 9-1
  • Synonyms
    Mirn9, Mirn9-1, mmu-mir-9-1
Location &
Maps
more
  • Sequence Map
    Chr3:88122905-88122993 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 38.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    64 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2676911
 miRNA gene Chr3:88122905-88122993 (+)
129S1/SvImJ ENSMUSG00200039649
 miRNA gene Chr3:84977769-84977857 (+)
A/J ENSMUSG00195053352
 miRNA gene Chr3:84999430-84999518 (+)
AKR/J ENSMUSG00220051787
 miRNA gene Chr3:84947511-84947599 (+)
BALB/cJ ENSMUSG00180049167
 miRNA gene Chr3:85117150-85117238 (+)
C3H/HeJ ENSMUSG00175048305
 miRNA gene Chr3:84932448-84932536 (+)
C57BL/6NJ ENSMUSG00215050741
 miRNA gene Chr3:85365475-85365563 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0007813
 miRNA gene Chr3:80989749-80989837 (+)
CAST/EiJ ENSTCUG00005048663
 miRNA gene Chr3:84453811-84453899 (+)
CBA/J ENSMUSG00210048665
 miRNA gene Chr3:85070149-85070237 (+)
DBA/2J ENSMUSG00185053612
 miRNA gene Chr3:85205797-85205885 (+)
FVB/NJ ENSMUSG00205051291
 miRNA gene Chr3:83994304-83994392 (+)
JF1/MsJ ENSUMUG00000051330
 miRNA gene Chr3:84744051-84744139 (+)
LP/J ENSMUSG00230037055
 miRNA gene Chr3:87199160-87199248 (+)
NOD/ShiLtJ ENSMUSG00190050888
 miRNA gene Chr3:85446539-85446627 (+)
NZO/HlLtJ ENSMUSG00225008068
 miRNA gene Chr3:89954729-89954817 (+)
PWK/PhJ ENSLUMG00010052424
 miRNA gene Chr3:84834310-84834398 (+)
SPRET/EiJ ENSMSPG00010050216
 miRNA gene Chr3:85674631-85674719 (+)
WSB/EiJ ENSIUOG00005050939
 miRNA gene Chr3:85446522-85446610 (+)



Homology
more
  • Human Ortholog
    MIR9-1, microRNA 9-1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR9-1, microRNA 9-1
  • Synonyms
    hsa-mir-9-1, mir-9-1, MIRN9-1, miRNA9-1
  • Links
    NCBI Gene ID: 407046

  • Chr Location
    chr1:156420341-156420429 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Mir9-1
  • Find Mice (IMSR)
    3 strains or lines available
Mice homozygous for a targeted deletion are viable with no observed pathologies.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    742
  • Tissues
    71
  • Literature Summary
    34
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 387133 NCBI Gene Model | MGI Sequence Detail 89 C57BL/6J ±  kb
transcript NR_029817 RefSeq | MGI Sequence Detail 89 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 21
    Genomic 1
    Primer pair 9
    Other 11
Other Database
Links
less
miRBase MI0000720
References
more
  • Summaries
    All 73
    Developmental Gene Expression 34
    Diseases 1
    Gene Ontology 8
    Phenotypes 7
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:358350 Virtanen HT, et al., Interindividual Variation in Gut Nitrergic Neuron Density Is Regulated By GDNF Levels and ETV1. Cell Mol Gastroenterol Hepatol. 2024;18(6):101405
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory