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Mir9-2hg Gene Detail
Summary
  • Symbol
    Mir9-2hg
  • Name
    Mir9-2 host gene
  • Synonyms
    2810449C10Rik, C130071C03Rik, C130071C03Riken, NDIME
Location &
Maps
more
  • Sequence Map
    Chr13:83869500-83889427 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 43.68 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    331 from dbSNP Build 142
  • Strain Annotations
    31
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443574
 lncRNA gene Chr13:83863087-84100589 (+)
129S1/SvImJ ENSMUSG00200005676
 protein coding gene Chr13:78326552-78354413 (+)
129S1/SvImJ ENSMUSG00200006405
 lncRNA gene Chr13:78326555-78565263 (+)
A/J ENSMUSG00195025272
 protein coding gene Chr13:78836185-78864136 (+)
A/J ENSMUSG00195025416
 lncRNA gene Chr13:78836251-79077842 (+)
AKR/J ENSMUSG00220016575
 protein coding gene Chr13:77376909-77404759 (+)
AKR/J ENSMUSG00220016767
 lncRNA gene Chr13:77376912-77613559 (+)
BALB/cJ ENSMUSG00180001539
 lncRNA gene Chr13:79335853-79573605 (+)
BALB/cJ ENSMUSG00180001294
 protein coding gene Chr13:79335850-79363706 (+)
C3H/HeJ ENSMUSG00175019512
 lncRNA gene Chr13:79587091-79824785 (+)
C3H/HeJ ENSMUSG00175018242
 protein coding gene Chr13:79587088-79614933 (+)
C57BL/6NJ ENSMUSG00215002490
 protein coding gene Chr13:79443555-79471408 (+)
C57BL/6NJ ENSMUSG00215002550
 lncRNA gene Chr13:79443558-79681355 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004983
 lincRNA gene Chr13:77978622-78139934 (+)
CAST/EiJ ENSTCUG00005004328
 lncRNA gene Chr13:78748593-78996137 (+)
CBA/J ENSMUSG00210005819
 lncRNA gene Chr13:78871859-79109555 (+)
CBA/J ENSMUSG00210005211
 protein coding gene Chr13:78871856-78899710 (+)
DBA/2J ENSMUSG00185009860
 protein coding gene Chr13:82552074-82579923 (+)
DBA/2J ENSMUSG00185010356
 lncRNA gene Chr13:82552077-82789774 (+)
FVB/NJ ENSMUSG00205011420
 protein coding gene Chr13:78321841-78349683 (+)
FVB/NJ ENSMUSG00205013431
 lncRNA gene Chr13:78321844-78558575 (+)
JF1/MsJ ENSUMUG00000023296
 lncRNA gene Chr13:82277952-82518559 (+)
LP/J ENSMUSG00230004002
 protein coding gene Chr13:92540502-92568358 (+)
LP/J ENSMUSG00230004648
 lncRNA gene Chr13:92540505-92778271 (+)
NOD/ShiLtJ ENSMUSG00190008455
 lncRNA gene Chr13:78892964-79130695 (+)
NOD/ShiLtJ ENSMUSG00190008184
 protein coding gene Chr13:78892961-78920824 (+)
NZO/HlLtJ ENSMUSG00225030332
 protein coding gene Chr13:85059001-85086857 (+)
NZO/HlLtJ ENSMUSG00225030874
 lncRNA gene Chr13:85059004-85296660 (+)
PWK/PhJ ENSLUMG00010014838
 lncRNA gene Chr13:78420260-78669470 (+)
SPRET/EiJ ENSMSPG00010001506
 lncRNA gene Chr13:79381375-79635672 (+)
WSB/EiJ ENSIUOG00005017785
 lncRNA gene Chr13:78152806-78399290 (+)



Homology
more
  • Human Ortholog
    MIR9-2HG, MIR9-2 host gene
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR9-2HG, MIR9-2 host gene
  • Synonyms
    ECONEXIN, EyeLinc1, LINC00461, LINC02060, NDIME, uc.166, VISC
  • Links
    NCBI Gene ID: 645323

  • Chr Location
    5q14.3; chr5:88408982-88691313 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving Mir9-2hg
  • Find Mice (IMSR)
    0 strains or lines available
Mice homozygous for a targeted allele exhibit normal anatomy and behavior.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    884
  • Tissues
    185
  • cDNA Data
    12
  • Literature Summary
    10
Sequences &
Gene Models
less
  • All Sequences
    214
  • RefSeq
    4
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 320203 NCBI Gene Model | MGI Sequence Detail 19928 C57BL/6J ±  kb
transcript NR_152244 RefSeq | MGI Sequence Detail 3668 C57BL/6  
polypeptide Q8BH22 UniProt | EBI | MGI Sequence Detail 100 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 28
    cDNA 12
    Primer pair 13
    Other 3

    Microarray probesets 5
Other
Accession IDs
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MGI:1920008, MGI:7513866
References
more
  • Summaries
    All 34
    Developmental Gene Expression 10
    Phenotypes 6
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:301383 Bai M, et al., Critical regulation of a NDIME/MEF2C axis in embryonic stem cell neural differentiation and autism. EMBO Rep. 2020 Nov 5;21(11):e50283
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory