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Cnpy1 Gene Detail
Summary
  • Symbol
    Cnpy1
  • Name
    canopy FGF signaling regulator 1
  • Synonyms
    1500012D20Rik, 9630008K15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442451
    NCBI Gene: 269637
  • Alliance
    genome feature page
  • Transcription Start Sites
    15 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:28405817-28450786 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 13.99 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1157 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442451
 protein coding gene Chr5:28405817-28450804 (-)
129S1/SvImJ ENSMUSG00200013002
 protein coding gene Chr5:23901437-23946380 (-)
A/J ENSMUSG00195043675
 protein coding gene Chr5:23360950-23405902 (-)
AKR/J ENSMUSG00220007063
 protein coding gene Chr5:23367150-23412117 (-)
BALB/cJ ENSMUSG00180036363
 protein coding gene Chr5:23165611-23210571 (-)
C3H/HeJ ENSMUSG00175038691
 protein coding gene Chr5:25140057-25185020 (-)
C57BL/6NJ ENSMUSG00215025126
 protein coding gene Chr5:23868675-23913667 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027038
 protein coding gene Chr5:22837464-22882087 (-)
CAST/EiJ no annotation
CBA/J ENSMUSG00210035314
 protein coding gene Chr5:24113339-24158304 (-)
DBA/2J ENSMUSG00185036283
 protein coding gene Chr5:25958540-26003529 (-)
FVB/NJ ENSMUSG00205015133
 protein coding gene Chr5:22886016-22930967 (-)
JF1/MsJ no annotation
LP/J ENSMUSG00230042612
 protein coding gene Chr5:30586787-30631725 (-)
NOD/ShiLtJ ENSMUSG00190012217
 protein coding gene Chr5:23173225-23218173 (-)
NZO/HlLtJ ENSMUSG00225018244
 protein coding gene Chr5:35810811-35855764 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CNPY1, canopy FGF signaling regulator 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CNPY1, canopy FGF signaling regulator 1
  • Links
    NCBI Gene ID: 285888
    UniProt: Q3B7I2

  • Chr Location
    7q36.3; chr7:155474206-155555450 (-)  GRCh38
Human Diseases
less
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    36 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • Tissues
    13
  • cDNA Data
    11
  • Literature Summary
    10
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 269637 NCBI Gene Model | MGI Sequence Detail 44970 C57BL/6J ±  kb
    transcript NM_001310511 RefSeq | MGI Sequence Detail 3760 C57BL/6  
    polypeptide Q4VAB4 UniProt | EBI | MGI Sequence Detail 94 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 12
      Primer pair 1
      Other 2

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1925577, MGI:2141000
    References
    more
    • Summaries
      All 68
      Developmental Gene Expression 10
      Diseases 2
      Phenotypes 36
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:388803 Mathias NA, et al., Loss of the endoplasmic reticulum protein canopy 1 disrupts the function and circuit organization of V2R-expressing vomeronasal sensory neurons. Development. 2026 Jun 15;153(12):dev205386
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory