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Idi1 Gene Detail
Summary
  • Symbol
    Idi1
  • Name
    isopentenyl-diphosphate delta isomerase
  • Synonyms
    4832416K17Rik, MGC:8139
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442264
    NCBI Gene: 319554
  • Alliance
    genome feature page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:8935642-8942432 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 3.62 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    197 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442264
 protein coding gene Chr13:8935537-8942487 (+)
129S1/SvImJ ENSMUSG00200005795
 protein coding gene Chr13:6110184-6117136 (+)
A/J ENSMUSG00195012347
 protein coding gene Chr13:5516333-5523285 (+)
AKR/J ENSMUSG00220013047
 protein coding gene Chr13:5782954-5789935 (+)
BALB/cJ ENSMUSG00180009347
 protein coding gene Chr13:5921875-5928825 (+)
C3H/HeJ ENSMUSG00175007820
 protein coding gene Chr13:5970043-5976997 (+)
C57BL/6NJ ENSMUSG00215009365
 protein coding gene Chr13:6223549-6230501 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018214
 protein coding gene Chr13:5451562-5458726 (+)
CAST/EiJ ENSTCUG00005023202
 protein coding gene Chr13:6128564-6135502 (+)
CBA/J ENSMUSG00210022657
 protein coding gene Chr13:5498145-5505095 (+)
DBA/2J ENSMUSG00185023423
 protein coding gene Chr13:6186692-6193642 (+)
FVB/NJ ENSMUSG00205017487
 protein coding gene Chr13:5938352-5945302 (+)
JF1/MsJ ENSUMUG00000005807
 protein coding gene Chr13:6225588-6232565 (+)
LP/J ENSMUSG00230006098
 protein coding gene Chr13:15678645-15686215 (+)
NOD/ShiLtJ ENSMUSG00190012851
 protein coding gene Chr13:5640099-5647076 (+)
NZO/HlLtJ ENSMUSG00225034036
 protein coding gene Chr13:9583670-9591240 (+)
PWK/PhJ ENSLUMG00010016063
 protein coding gene Chr13:5580781-5587795 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005021513
 protein coding gene Chr13:5467869-5474840 (+)



Homology
more
  • Human Ortholog
    IDI1, isopentenyl-diphosphate delta isomerase 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IDI1, isopentenyl-diphosphate delta isomerase 1
  • Synonyms
    IPP1, IPPI1
  • Links
    NCBI Gene ID: 3422
    UniProt: Q13907

  • Chr Location
    10p15.3; chr10:1039152-1056704 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    28
  • GO References
    16
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    973
  • Tissues
    134
  • cDNA Data
    164
  • Literature Summary
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 319554 NCBI Gene Model | MGI Sequence Detail 6791 C57BL/6J ±  kb
    transcript NM_145360 RefSeq | MGI Sequence Detail 2883 C57BL/6  
    polypeptide P58044 UniProt | EBI | MGI Sequence Detail 227 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • Protein Ontology
      PR:000008892 isopentenyl-diphosphate Delta-isomerase 1
      (term hierarchy)
    • EC
      5.3.3.2
    • InterPro Domains
      IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1
      IPR000086 NUDIX hydrolase domain
      IPR015797 NUDIX hydrolase-like domain superfamily
    • GlyGen
      P58044 2 sites, 1 N-linked glycan (1 site), 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 167
      cDNA 164
      Primer pair 2
      Other 1

      Microarray probesets 6
    References
    more
    • Summaries
      All 55
      Developmental Gene Expression 7
      Gene Ontology 16
      Phenotypes 10
    • Earliest
      J:371708 Bruenger E, et al., Determination of isopentenyl diphosphate and farnesyl diphosphate in tissue samples with a comment on secondary regulation of polyisoprenoid biosynthesis. Anal Biochem. 1988 Sep;173(2):321-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory