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Cbln4 Gene Detail
Summary
  • Symbol
    Cbln4
  • Name
    cerebellin 4 precursor protein
  • Feature Type
    protein coding gene
  • IDs
    MGI:2154433
    NCBI Gene: 228942
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
  • Regulated by
    Rr374 (1 regulatory region)
Location &
Maps
more
  • Sequence Map
    Chr2:171878256-171885386 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 94.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    263 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2154433
 protein coding gene Chr2:171878153-171885386 (-)
129S1/SvImJ ENSMUSG00200039934
 protein coding gene Chr2:168798380-168805613 (-)
A/J ENSMUSG00195023206
 protein coding gene Chr2:169126628-169133862 (-)
AKR/J ENSMUSG00220033563
 protein coding gene Chr2:168422370-168429604 (-)
BALB/cJ ENSMUSG00180031354
 protein coding gene Chr2:168565483-168572714 (-)
C3H/HeJ ENSMUSG00175040649
 protein coding gene Chr2:169337979-169345209 (-)
C57BL/6NJ ENSMUSG00215020023
 protein coding gene Chr2:168768298-168775531 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024732
 protein coding gene Chr2:163983590-163990847 (-)
CAST/EiJ ENSTCUG00005008262
 protein coding gene Chr2:167668541-167675763 (-)
CBA/J ENSMUSG00210038974
 protein coding gene Chr2:169245514-169252745 (-)
DBA/2J ENSMUSG00185023930
 protein coding gene Chr2:168959516-168966746 (-)
FVB/NJ ENSMUSG00205014893
 protein coding gene Chr2:167999515-168006748 (-)
JF1/MsJ ENSUMUG00000030692
 protein coding gene Chr2:168660690-168667913 (-)
LP/J ENSMUSG00230011032
 protein coding gene Chr2:170534861-170542094 (-)
NOD/ShiLtJ ENSMUSG00190037435
 protein coding gene Chr2:168652917-168660150 (-)
NZO/HlLtJ ENSMUSG00225002444
 protein coding gene Chr2:178521612-178528842 (-)
PWK/PhJ ENSLUMG00010033130
 protein coding gene Chr2:168546829-168554052 (-)
SPRET/EiJ ENSMSPG00010023147
 protein coding gene Chr2:171305065-171312310 (-)
WSB/EiJ ENSIUOG00005022049
 protein coding gene Chr2:168389042-168396274 (-)



Homology
more
  • Human Ortholog
    CBLN4, cerebellin 4 precursor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CBLN4, cerebellin 4 precursor
  • Synonyms
    CBLNL1
  • Links
    NCBI Gene ID: 140689
    UniProt: Q9NTU7

  • Chr Location
    20q13.2; chr20:55997357-56005519 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    19 phenotype references
Mice homozygous for a knock-out allele exhibit no abnormal phenotype.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    31
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    970
  • Tissues
    222
  • cDNA Data
    16
  • Literature Summary
    24
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 228942 NCBI Gene Model | MGI Sequence Detail 7131 C57BL/6J ±  kb
transcript NM_175631 RefSeq | MGI Sequence Detail 2799 C57BL/6  
polypeptide Q8BME9 UniProt | EBI | MGI Sequence Detail 198 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 25
    cDNA 17
    Primer pair 7
    Other 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2139075
References
more
  • Summaries
    All 66
    Developmental Gene Expression 24
    Gene Ontology 10
    Phenotypes 19
  • Earliest
    J:81347 Menke DB, et al., Sexually dimorphic gene expression in the developing mouse gonad. Gene Expr Patterns. 2002 Dec;2(3-4):359-67
  • Latest
    J:364536 Chen C, et al., Accessing genetically defined cell types in the superior colliculus with transgenic mouse lines. iScience. 2025 Apr 18;28(4):112194
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory