About   Help   FAQ
Ccnyl1 Gene Detail
Summary
  • Symbol
    Ccnyl1
  • Name
    cyclin Y-like 1
  • Synonyms
    9630037P07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138614
    NCBI Gene: 227210
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:64729963-64764805 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 32.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    737 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138614
 protein coding gene Chr1:64729614-64764805 (+)
129S1/SvImJ ENSMUSG00200004147
 protein coding gene Chr1:62222545-62257722 (+)
A/J ENSMUSG00195029564
 protein coding gene Chr1:61750435-61785612 (+)
AKR/J ENSMUSG00220036446
 protein coding gene Chr1:61875096-61910287 (+)
BALB/cJ ENSMUSG00180028533
 protein coding gene Chr1:62057884-62093075 (+)
C3H/HeJ ENSMUSG00175000823
 protein coding gene Chr1:62138692-62173869 (+)
C57BL/6NJ ENSMUSG00215018459
 protein coding gene Chr1:62083645-62118835 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014209
 protein coding gene Chr1:58644012-58681869 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210003167
 protein coding gene Chr1:61823978-61859168 (+)
DBA/2J ENSMUSG00185004818
 protein coding gene Chr1:62940928-62976118 (+)
FVB/NJ ENSMUSG00205014421
 protein coding gene Chr1:61769668-61804846 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230002377
 protein coding gene Chr1:62931710-62966886 (+)
NOD/ShiLtJ ENSMUSG00190012791
 protein coding gene Chr1:62001713-62036890 (+)
NZO/HlLtJ ENSMUSG00225001188
 protein coding gene Chr1:66156417-66191594 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CCNYL1, cyclin Y like 1
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCNYL1, cyclin Y like 1
  • Links
    NCBI Gene ID: 151195
    UniProt: Q8N7R7

  • Chr Location
    2q33.3; chr2:207711524-207761839 (+)  GRCh38
  • Human Ortholog
    CCNYL2, cyclin Y like 2 (pseudogene)
  • Synonyms
    bA178A10.2, C10orf21, CCNYL2P
  • Links
    NCBI Gene ID: 414194
    UniProt: Q5T2Q4

  • Chr Location
    chr10:42408168-42475349 (-)  GRCh38
  • Human Ortholog
    CCNYL3, cyclin Y like 3 (pseudogene)
  • Links
    NCBI Gene ID: 102724928

  • Chr Location
    chr16:35030349-35084313 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    3 phenotypes from multigenic genotypes
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit male infertility associated with asthenozoospermia and teratozoospermia.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    642
  • Tissues
    17
  • cDNA Data
    42
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 227210 NCBI Gene Model | MGI Sequence Detail 34843 C57BL/6J ±  kb
    transcript NM_001097644 RefSeq | MGI Sequence Detail 2940 C57BL/6  
    polypeptide D3YUJ3 UniProt | EBI | MGI Sequence Detail 367 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 44
      cDNA 42
      Primer pair 1
      Other 1
      Antibodies 3

      Microarray probesets 4
    References
    more
    • Summaries
      All 39
      Developmental Gene Expression 3
      Gene Ontology 7
      Phenotypes 16
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    09/15/2026
    MGI 6.29     		The Jackson Laboratory