Tmem238l MGI Mouse Gene Detail - MGI:1918826 - transmembrane protein 238 like

Symbol

Tmem238l
Name

transmembrane protein 238 like
Synonyms

9130409J20Rik, CLAP

Feature Type

protein coding gene
IDs

MGI:1918826
NCBI Gene: 71576
Alliance

genome feature page
Transcription Start Sites

12 TSS

Sequence Map

Chr11:66847464-66855842 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 40.59 cM
Mapping Data

1 experiment

SNPs within 2kb

324 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918826	protein coding gene	Chr11:66847368-66855842 (+)
129S1/SvImJ	ENSMUSG00200043574	protein coding gene	Chr11:63794629-63802762 (+)
A/J	ENSMUSG00195051912	protein coding gene	Chr11:63815052-63823161 (+)
AKR/J	ENSMUSG00220038573	protein coding gene	Chr11:63930581-63938689 (+)
BALB/cJ	ENSMUSG00180053294	protein coding gene	Chr11:63881130-63889262 (+)
C3H/HeJ	ENSMUSG00175053613	protein coding gene	Chr11:63831397-63839507 (+)
C57BL/6NJ	ENSMUSG00215052816	protein coding gene	Chr11:63615390-63623492 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004756	lincRNA gene	Chr11:61675525-61683725 (+)
CAST/EiJ	ENSTCUG00005053167	protein coding gene	Chr11:63365182-63373333 (+)
CBA/J	ENSMUSG00210050939	protein coding gene	Chr11:63685652-63693786 (+)
DBA/2J	ENSMUSG00185053964	protein coding gene	Chr11:63879827-63887957 (+)
FVB/NJ	ENSMUSG00205022044	protein coding gene	Chr11:63779039-63787172 (+)
JF1/MsJ	ENSUMUG00000056711	protein coding gene	Chr11:64274606-64282700 (+)
LP/J	ENSMUSG00230052698	protein coding gene	Chr11:65005070-65013202 (+)
NOD/ShiLtJ	ENSMUSG00190030501	protein coding gene	Chr11:63912588-63920696 (+)
NZO/HlLtJ	ENSMUSG00225047679	protein coding gene	Chr11:67184908-67193015 (+)
PWK/PhJ	ENSLUMG00010036604	protein coding gene	Chr11:63792658-63800762 (+)
SPRET/EiJ	ENSMSPG00010031895	protein coding gene	Chr11:64526572-64526912 (+)
WSB/EiJ	ENSIUOG00005048346	protein coding gene	Chr11:63816746-63824862 (+)

Human Ortholog

TMEM238L, transmembrane protein 238 like

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

TMEM238L, transmembrane protein 238 like
Synonyms

FORCP, LINC00675
Links

HGNC:44356

NCBI Gene ID: 100289255

UniProt: A6NJY4
Chr Location

chr17:10794908-10804099 (-) GRCh38

MGI Vertebrate Homology

Tmem238l stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: TMEM238L
Gene Tree

Tmem238l

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Endonuclease-mediated

1
Genomic Mutations

1 involving Tmem238l
Find Mice (IMSR)

1 strains or lines available

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All GO Annotations

4
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

613
Tissues

16
cDNA Data

3
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

35
RefSeq

5
UniProt

2

Ensembl

ENSMUSG00000085683 (Evidence)
NCBI Gene

71576

			Length	Strain/Species	Flank
genomic	ENSMUSG00000085683	Ensembl Gene Model \| MGI Sequence Detail	8379	C57BL/6J	± kb
transcript	ENSMUST00000211300	Ensembl \| MGI Sequence Detail	930	Not Applicable
polypeptide	ENSMUSP00000147820	Ensembl \| MGI Sequence Detail	79	Not Applicable

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UniProt

2 Sequences
InterPro Domains

IPR029365 TMEM238 protein

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All nucleic 3

cDNA 3

Microarray probesets 1

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MGI:5906672

Summaries

All 22

Developmental Gene Expression 2

Gene Ontology 2

Phenotypes 5
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:368728 Ibi Y, et al., In vitro generation of a ureteral organoid from pluripotent stem cells. Nat Commun. 2025 Jun 20;16(1):5309

TSS for Tmem238l:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102137	Chr11:66845914-66845928 (+)	-1,543 bp
Tssr102138	Chr11:66847306-66847315 (+)	-153 bp
Tssr102139	Chr11:66847334-66847351 (+)	-121 bp
Tssr102140	Chr11:66847360-66847383 (+)	-92 bp
Tssr102141	Chr11:66847391-66847401 (+)	-68 bp
Tssr3522	Chr11:66847418-66847423 (+)	-43 bp
Tssr102142	Chr11:66847446-66847493 (+)	6 bp
Tssr102143	Chr11:66847508-66847519 (+)	50 bp
Tssr102144	Chr11:66847523-66847530 (+)	63 bp
Tssr102145	Chr11:66848720-66848744 (+)	1,268 bp
Tssr102146	Chr11:66848748-66848763 (+)	1,292 bp
Tssr102147	Chr11:66848764-66848802 (+)	1,319 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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