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Snrpc Gene Detail
Summary
  • Symbol
    Snrpc
  • Name
    U1 small nuclear ribonucleoprotein C
  • Synonyms
    Snrp1c, U1-C
  • Feature Type
    protein coding gene
  • IDs
    MGI:109489
    NCBI Gene: 20630
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:28059002-28070942 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 14.59 cM, cytoband B1
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    172 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109489
 protein coding gene Chr17:28057124-28070942 (+)
129S1/SvImJ ENSMUSG00200052106
 protein coding gene Chr17:23714561-23728584 (+)
A/J ENSMUSG00195053604
 protein coding gene Chr17:24531041-24545066 (+)
AKR/J ENSMUSG00220051993
 protein coding gene Chr17:23578678-23592704 (+)
BALB/cJ ENSMUSG00180033659
 protein coding gene Chr17:24011438-24025458 (+)
C3H/HeJ ENSMUSG00175050932
 protein coding gene Chr17:23567136-23581160 (+)
C57BL/6NJ ENSMUSG00215053671
 protein coding gene Chr17:23567754-23581575 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021308
 protein coding gene Chr17:23690507-23701287 (+)
CAST/EiJ ENSTCUG00005041751
 protein coding gene Chr17:24305440-24319552 (+)
CBA/J ENSMUSG00210043618
 protein coding gene Chr17:23405597-23419623 (+)
DBA/2J ENSMUSG00185052055
 protein coding gene Chr17:25620543-25634567 (+)
FVB/NJ ENSMUSG00205052663
 protein coding gene Chr17:23882046-23896074 (+)
JF1/MsJ ENSUMUG00000044321
 protein coding gene Chr17:25058986-25091374 (+)
LP/J ENSMUSG00230054531
 protein coding gene Chr17:27140412-27154433 (+)
NOD/ShiLtJ ENSMUSG00190053698
 protein coding gene Chr17:23515214-23529031 (+)
NZO/HlLtJ ENSMUSG00225053446
 protein coding gene Chr17:29109127-29122946 (+)
PWK/PhJ ENSLUMG00010038588
 protein coding gene Chr17:23007795-23020029 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    SNRPC, small nuclear ribonucleoprotein polypeptide C
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNRPC, small nuclear ribonucleoprotein polypeptide C
  • Synonyms
    U1C, Yhc1
  • Links
    NCBI Gene ID: 6631
    UniProt: P09234

  • Chr Location
    6p21.31; chr6:34757454-34773857 (+)  GRCh38
Human Diseases
more
  • Diseases
    3 with human SNRPC associations

Human Disease Mouse Models
      
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    44
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    11
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20630 NCBI Gene Model | MGI Sequence Detail 11941 C57BL/6J ±  kb
transcript NM_001413575 RefSeq | MGI Sequence Detail 1104 C57BL/6  
polypeptide Q62241 UniProt | EBI | MGI Sequence Detail 159 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-39488
References
more
  • Summaries
    All 39
    Gene Ontology 9
    Phenotypes 5
  • Earliest
    J:37896 Nelissen RL, et al., Cloning and characterization of two processed pseudogenes and the cDNA for the murine U1 snRNP-specific protein C. Gene. 1997 Jan 15;184(2):273-8
  • Latest
    J:219795 Sun S, et al., ALS-causative mutations in FUS/TLS confer gain and loss of function by altered association with SMN and U1-snRNP. Nat Commun. 2015;6:6171
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory