Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  10
• Reference
  J:10716 Justice MJ, et al., A genetic linkage map of mouse chromosome 10: localization of eighteen molecular markers using a single interspecific backcross. Genetics. 1990 Aug;125(4):855-66
• ID
  MGI:39444

Genes

Gene	Allele	Assay Type	Description
Act2		Southern analysis	beta2000
Esr1		Southern analysis	pOR3
Myb		Southern analysis	Myb genomic
Ahi1		Southern analysis	p2-1
Braf-rs1		Southern analysis	pEX
Fyn		Southern analysis	Fyn cDNA
Ros1		Southern analysis	pSc3.2/23
D10Cos1		Southern analysis	p2351
Cdk1		Southern analysis	C1-BS
Bcr		Southern analysis	Bcr cDNA
Col6a1		Southern analysis	p18
Col6a2		Southern analysis	p1
S100b		Southern analysis	pHS100/2.2
Pah		Southern analysis	Pah cDNA
Igf1		Southern analysis	pmigf1-2
Ifng		Southern analysis	M(gamma)IFN
Hmga2	Hmga2^pg	Southern analysis	pg genomic
Gli1		Southern analysis	pMGLI-RS

Notes

• Experiment
  The locus symbol for the estrogen receptor gene as identified by probe pOR3 was given as Esr in the reference is replaced here by Estr. Symbol pg represents pg^cha which is a transgenic integration at the pygmy locus. Eleven progeny were not typed for S100b, these included 3 in the nonrecombinant M. spretus class, 2 in the nonrecombinant C57BL/6J class and 1 each in the following class: recombinant between Esr and Myb, recombinant between Fyn and Ros, recombinant between Ros and D10Cos1, recombinant between Cdc2a and Bcr, recombinant between Igf-1 and Ifg, and recombinant between pg^cha and Gli.Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x M. spretus)F1
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Mapping Panel
  Copeland-Jenkins
• Allele 1
  b from C57BL/6J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	Act2	Esr1	Myb	Ahi1	Braf-rs1	Fyn	Ros1	D10Cos1	Cdk1	Bcr	Col6a1	Col6a2	S100b	Pah	Igf1	Ifng	Hmga2	Gli1
31	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
17	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
0	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
2	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
2	s	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b
2	b	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s
1	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b
0	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b
4	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s
3	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b	b
0	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s	s
1	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b
4	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s
0	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s
0	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s
5	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b
3	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s
0	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s
14	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b
7	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s
0	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s
1	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b
2	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b
1	s	s	s	s	b	b	b	b	b	b	b	b	b	b	b	s	s	s
1	b	b	b	b	s	s	s	s	s	s	s	s	s	s	s	b	b	b
1	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	b	b	b

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Act2	Esr1	0	108	0.000	0.000
Esr1	Myb	5	108	4.630	2.022
Myb	Ahi1	0	108	0.000	0.000
Ahi1	Braf-rs1	6	108	5.556	2.204
Braf-rs1	Fyn	1	108	0.926	0.922
Fyn	Ros1	6	108	5.556	2.204
Ros1	D10Cos1	4	108	3.704	1.817
D10Cos1	Cdk1	5	108	4.630	2.022
Cdk1	Bcr	1	108	0.926	0.922
Bcr	Col6a1	1	108	0.926	0.922
Col6a1	Col6a2	0	108	0.000	0.000
Col6a2	S100b	0	108	0.000	0.000
S100b	Pah	8	108	7.407	2.520
Pah	Igf1	1	108	0.926	0.922
Igf1	Ifng	26	108	24.074	4.114
Ifng	Hmga2	1	108	0.926	0.922
Hmga2	Gli1	1	108	0.926	0.922