Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  11
• Reference
  J:69530 Watters JW, et al., Genetic, physical, and transcript map of the ltxs1 region of mouse chromosome 11. Genomics. 2001 Apr 15;73(2):223-31
• ID
  MGI:2136346

Genes

Gene	Allele	Assay Type
D11Mit90		overlapping clones, direct sequencing
Kif1c	Kif1c^Ltxs1
Pld2		overlapping clones, direct sequencing
Psmb6		overlapping clones, direct sequencing
D11Mit210		overlapping clones, direct sequencing
D11Die4		overlapping clones, direct sequencing
Pfn1		overlapping clones, direct sequencing
Gp1ba		overlapping clones, direct sequencing
Slc25a11		overlapping clones, direct sequencing
D11Die5		overlapping clones, direct sequencing
Eno3		overlapping clones, direct sequencing
Spag7		overlapping clones, direct sequencing
Camta2		overlapping clones, direct sequencing
D11Die6		overlapping clones, direct sequencing
D11Die30		overlapping clones, direct sequencing
D11Die7		overlapping clones, direct sequencing
Rpl37a-ps1		overlapping clones, direct sequencing
D11Die9		overlapping clones, direct sequencing
D11Die10		overlapping clones, direct sequencing
D11Die31		overlapping clones, direct sequencing
Rabep1		overlapping clones, direct sequencing
D11Die13		overlapping clones, direct sequencing
Nup88		overlapping clones, direct sequencing
D11Die32		overlapping clones, direct sequencing
D11Die33		overlapping clones, direct sequencing
D11Mit320		overlapping clones, direct sequencing
C1qbp		overlapping clones, direct sequencing
D11Die34		overlapping clones, direct sequencing
D11Die14		overlapping clones, direct sequencing
Derl2		overlapping clones, direct sequencing
D11Die16		overlapping clones, direct sequencing
D11Die35		overlapping clones, direct sequencing
D11Die17		overlapping clones, direct sequencing
D11Die19		overlapping clones, direct sequencing
D11Die20		overlapping clones, direct sequencing
D11Die40		overlapping clones, direct sequencing
D11Die21		overlapping clones, direct sequencing
D11Die36		overlapping clones, direct sequencing
D11Die22		overlapping clones, direct sequencing
D11Die24		overlapping clones, direct sequencing
D11Die25		overlapping clones, direct sequencing
D11Die26		overlapping clones, direct sequencing
D11Die27		overlapping clones, direct sequencing
D11Die37		overlapping clones, direct sequencing
D11Die38		overlapping clones, direct sequencing

Notes

• Experiment
  The authors narrowed the Kif1c^Ltxs1 region to a 0.51 cM region between D11Mit90 and D11Die37/D11Die38. The 129S3 and 129/SvEv strains were used to construct the CITB and RPC1-22 BAC libraries respectively. the authors used BACs from these libraries to build a physical map of the Kif1c^Ltxs1 region. the non-recombinant interval between D11Mit90 and D11Die37/D11Die38 was spanned by two YAC clones 134d8 and 458d4 and a minimum tiling path of BAC clones. The order and orientation of markers in this interval were determined to be: centromere - D11Mit90 - (Pld2, Psmb6) - D11Mit210 - D11Die4 - (Pfn1, Gp1ba, Slc25a11) - D11Die5 - 5' - Eno3 - 3' - (Spag7, Camta2) - D11Die6, D11Die30 - Kif1c - D11Die7 - Rpl37a-ps1 - D11Die9 - D11Die10 , D11Die31 - 5' Rab5ep - 3' - D11Die13 - 3' - Nup88 - 5' - 5' C1qbp - 3' - D11Die32, D11Die33, D11Mit320 - D11Die34 - D11Die14 - 3' - Flana - 5' - D11Die16 - D11Die35 - D11Die17 - D11Die19 - D11Die20 - D11Die40 - D11Die21 - D11Die36 - D11Die22 - D11Die24 - D11Die25 - D11Die26 - D11Die27- D11Die37 - D11Die38.