Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VMP1
  • Mouse genes Vmp1
  • Rat genes Vmp1
  • Zfish genes vmp1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Vmp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0017128	phospholipid scramblase activity	VMP1	IDA		Human	PMID:33850023
Molecular Function	GO:0017128	phospholipid scramblase activity	VMP1	IDA		Human	PMID:33929485
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q07157	Human	PMID:17724469
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q8IXH6	Human	PMID:19056683
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q14457	Human	PMID:23316280
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:O00631|UniProtKB:O14983|UniProtKB:P16615|UniProtKB:P26678|UniProtKB:Q93084	Human	PMID:28890335
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q5BJD5	Human	PMID:30093494
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:P00387	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q5JX71	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q6FHY5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q9NUM3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VMP1	IPI	UniProtKB:Q9Y282	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Vmp1	IPI	UniProtKB:Q14457	Rat	PMID:17724469|RGD:8554778
Molecular Function	GO:0005515	protein binding	Vmp1	IPI	UniProtKB:Q14457	Rat	PMID:23316280|RGD:10412299
Cellular Component	GO:0000421	autophagosome membrane	Vmp1	IDA		Rat	PMID:17940279|RGD:8554414
Cellular Component	GO:0005783	endoplasmic reticulum	VMP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	VMP1	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005783	endoplasmic reticulum	VMP1	IDA		Human	PMID:17724469
Cellular Component	GO:0005789	endoplasmic reticulum membrane	VMP1	IDA		Human	PMID:28890335
Cellular Component	GO:0005730	nucleolus	VMP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000407	phagophore assembly site	Vmp1	IDA		Mouse	PMID:21220506
Biological Process	GO:0000045	autophagosome assembly	VMP1	IDA		Human	PMID:28890335
Biological Process	GO:0000045	autophagosome assembly	VMP1	IMP		Human	PMID:30093494
Biological Process	GO:0000045	autophagosome assembly	VMP1	IMP		Human	PMID:30933966
Biological Process	GO:0016240	autophagosome membrane docking	VMP1	IDA		Human	PMID:28890335
Biological Process	GO:0006914	autophagy	VMP1	IDA		Human	PMID:28890335
Biological Process	GO:0006914	autophagy	Vmp1	IDA		Mouse	MGI:MGI:3768504|PMID:17940279
Biological Process	GO:0006914	autophagy	Vmp1	IDA		Rat	PMID:17940279|RGD:8554414
Biological Process	GO:0006914	autophagy	vmp1	IMP	ZFIN:ZDB-GENO-201112-22	Zfish	PMID:31526472
Biological Process	GO:0034329	cell junction assembly	VMP1	IMP		Human	PMID:17724469
Biological Process	GO:0098609	cell-cell adhesion	VMP1	IMP		Human	PMID:17724469
Biological Process	GO:0007566	embryo implantation	Vmp1	IDA		Mouse	PMID:18556655
Biological Process	GO:0042953	lipoprotein transport	VMP1	IMP		Human	PMID:31526472
Biological Process	GO:0042953	lipoprotein transport	Vmp1	IMP		Mouse	MGI:MGI:6369525|PMID:31526472
Biological Process	GO:0042953	lipoprotein transport	vmp1	IMP		Zfish	PMID:31526472|ZFIN:ZDB-PUB-190919-1
Biological Process	GO:0042953	lipoprotein transport	vmp1	IMP	ZFIN:ZDB-GENO-201112-22	Zfish	PMID:31526472
Biological Process	GO:1990456	mitochondrion-endoplasmic reticulum membrane tethering	VMP1	IDA		Human	PMID:28890335
Biological Process	GO:0140056	organelle localization by membrane tethering	VMP1	IDA		Human	PMID:28890335
Biological Process	GO:1901896	positive regulation of ATPase-coupled calcium transmembrane transporter activity	VMP1	IDA		Human	PMID:28890335

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern