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Vmp1 Gene Detail
Summary
  • Symbol
    Vmp1
  • Name
    vacuole membrane protein 1
  • Synonyms
    3110098I04Rik, 4930579A11Rik, Tango5, Tmem49
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923159
    NCBI Gene: 75909
  • Gene Overview
    MyGene.info: VMP1
Location & Maps
more
  • Sequence Map
    Chr11:86583865-86683836 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      99972 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 51.82 cM, cytoband C
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    VMP1, vacuole membrane protein 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    VMP1, vacuole membrane protein 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    EPG3, TANGO5, TMEM49
  • Links
    NCBI Gene ID: 81671
    neXtProt AC: NX_Q96GC9

  • Chr Location
    17q23.1; chr17:59707502-59840593 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotype references
  • All Mutations and Alleles
    43
  • Chemically induced (other)
    1
  • Gene trapped
    39
  • Targeted
    3
  • Genomic Mutations
    2 involving Vmp1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001205 VEGA Gene Model | MGI Sequence Detail 99972 C57BL/6J ±  kb
transcript OTTMUST00000002400 VEGA | MGI Sequence Detail 2787 Not Applicable  
polypeptide OTTMUSP00000001183 VEGA | MGI Sequence Detail 406 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    332 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000016431 vacuole membrane protein 1
  • InterPro Domains
    IPR032816 SNARE associated Golgi protein
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 4
Other
Accession IDs
less
MGI:1925760, MGI:2144264
References
more
  • Summaries
    All 36
    Gene Ontology 7
    Phenotypes 15
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory