Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VIPAS39
  • Mouse genes Vipas39
  • Rat genes Vipas39
  • Zfish genes vipas39
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Vipas39

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:P49754	Human	PMID:19109425
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q8R307	Human	PMID:19109425
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q91W86	Human	PMID:19109425
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q920Q4	Human	PMID:19109425
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q96AX1	Human	PMID:19109425
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:19109425
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:20190753
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:22677173
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:23901104
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:23918659
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:25783203
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:28017832
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:29778605
Molecular Function	GO:0005515	protein binding	VIPAS39	IPI	UniProtKB:Q9H267	Human	PMID:32296183
Molecular Function	GO:0044877	protein-containing complex binding	VIPAS39	IDA		Human	PMID:19109425
Cellular Component	GO:0005737	cytoplasm	VIPAS39	IDA		Human	PMID:20190753
Cellular Component	GO:0005769	early endosome	VIPAS39	IDA		Human	PMID:19109425
Cellular Component	GO:0005768	endosome	VIPAS39	IDA		Human	PMID:23918659
Cellular Component	GO:0005794	Golgi apparatus	VIPAS39	IDA		Human	PMID:27435297
Cellular Component	GO:0005770	late endosome	VIPAS39	IDA		Human	PMID:19109425
Cellular Component	GO:0055037	recycling endosome	VIPAS39	IDA		Human	PMID:19109425
Cellular Component	GO:0099023	vesicle tethering complex	VIPAS39	IPI		Human	PMID:23918659
Biological Process	GO:0030199	collagen fibril organization	Vipas39	IMP	MGI:MGI:3699244,MGI:MGI:5816979	Mouse	PMID:27435297
Biological Process	GO:0032963	collagen metabolic process	VIPAS39	IMP		Human	PMID:27435297
Biological Process	GO:0032963	collagen metabolic process	Vipas39	IMP	MGI:MGI:3699244,MGI:MGI:5816979	Mouse	PMID:27435297
Biological Process	GO:0008333	endosome to lysosome transport	VIPAS39	IMP		Human	PMID:19109425
Biological Process	GO:0061008	hepaticobiliary system development	vipas39	IMP	ZFIN:ZDB-MRPHLNO-100427-19	Zfish	PMID:20190753
Biological Process	GO:0061008	hepaticobiliary system development	vipas39	IMP	ZFIN:ZDB-MRPHLNO-100427-20	Zfish	PMID:20190753
Biological Process	GO:0006886	intracellular protein transport	VIPAS39	IMP		Human	PMID:19109425
Biological Process	GO:0006886	intracellular protein transport	Vipas39	IMP		Mouse	PMID:27435297
Biological Process	GO:0017185	peptidyl-lysine hydroxylation	VIPAS39	IMP		Human	PMID:27435297
Biological Process	GO:0017185	peptidyl-lysine hydroxylation	Vipas39	IMP	MGI:MGI:3699244,MGI:MGI:5816979	Mouse	PMID:27435297
Biological Process	GO:0043687	post-translational protein modification	Vipas39	IMP		Mouse	PMID:27435297

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern