Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VAMP1
  • Mouse genes Vamp1
  • Rat genes Vamp1
  • Zfish genes vamp1a,vamp1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Vamp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	VAMP1	IPI	UniProtKB:O95721	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	VAMP1	IPI	UniProtKB:Q12846	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	VAMP1	IPI	UniProtKB:Q8N6L0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	VAMP1	IPI	UniProtKB:O95292	Human	PMID:9920726
Molecular Function	GO:0005515	protein binding	Vamp1	IPI	UniProtKB:G3V7P1	Rat	PMID:17717530|RGD:8554124
Cellular Component	GO:0009986	cell surface	Vamp1	IDA		Mouse	MGI:MGI:5567905|PMID:21151919
Cellular Component	GO:0098978	glutamatergic synapse	Vamp1	IDA		Mouse	PMID:24944211
Cellular Component	GO:0098978	glutamatergic synapse	Vamp1	IMP		Mouse	PMID:24944211
Cellular Component	GO:0005739	mitochondrion	Vamp1	HDA		Mouse	PMID:18614015
Cellular Component	GO:0031594	neuromuscular junction	Vamp1	IDA		Mouse	PMID:21282288
Cellular Component	GO:0031594	neuromuscular junction	Vamp1	IMP		Mouse	PMID:21282288
Cellular Component	GO:0098793	presynapse	Vamp1	EXP		Rat	PMID:24876496|RGD:10047219
Cellular Component	GO:0098793	presynapse	Vamp1	IDA		Rat	PMID:24876496|RGD:10047219
Cellular Component	GO:0035579	specific granule membrane	VAMP1	IDA		Human	PMID:11391393
Cellular Component	GO:0043195	terminal bouton	Vamp1	HDA		Rat	PMID:24876496|RGD:10047219
Cellular Component	GO:0070821	tertiary granule membrane	VAMP1	IDA		Human	PMID:11391393
Biological Process	GO:0031630	regulation of synaptic vesicle fusion to presynaptic active zone membrane	Vamp1	IMP		Mouse	PMID:21282288
Biological Process	GO:0031630	regulation of synaptic vesicle fusion to presynaptic active zone membrane	Vamp1	IDA		Mouse	PMID:21282288
Biological Process	GO:0035493	SNARE complex assembly	Vamp1	IDA		Mouse	MGI:MGI:5567905|PMID:21151919
Biological Process	GO:0016082	synaptic vesicle priming	Vamp1	IDA		Mouse	PMID:24944211
Biological Process	GO:0016082	synaptic vesicle priming	Vamp1	IMP		Mouse	PMID:24944211

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern