Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UPB1
  • Mouse genes Upb1
  • Rat genes Upb1
  • Zfish genes upb1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Upb1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003837	beta-ureidopropionase activity	UPB1	IDA		Human	PMID:22525402
Molecular Function	GO:0003837	beta-ureidopropionase activity	UPB1	IDA		Human	PMID:29976570
Molecular Function	GO:0003837	beta-ureidopropionase activity	Upb1	IDA		Mouse	PMID:5472365
Molecular Function	GO:0003837	beta-ureidopropionase activity	Upb1	IDA		Rat	PMID:7626590|RGD:1624989
Molecular Function	GO:0003837	beta-ureidopropionase activity	Upb1	IDA		Rat	PMID:8449931|RGD:634224
Molecular Function	GO:0042803	protein homodimerization activity	UPB1	IDA		Human	PMID:29976570
Molecular Function	GO:0008270	zinc ion binding	Upb1	IDA		Rat	PMID:8449931|RGD:634224
Cellular Component	GO:0005829	cytosol	Upb1	IDA		Mouse	PMID:5472365
Cellular Component	GO:0070062	extracellular exosome	UPB1	HDA		Human	PMID:19056867
Biological Process	GO:0033396	beta-alanine biosynthetic process via 3-ureidopropionate	UPB1	IDA		Human	PMID:22525402
Biological Process	GO:0033396	beta-alanine biosynthetic process via 3-ureidopropionate	UPB1	IDA		Human	PMID:29976570
Biological Process	GO:0019482	beta-alanine metabolic process	Upb1	IDA		Rat	PMID:7626590|RGD:1624989
Biological Process	GO:0006248	CMP catabolic process	Upb1	IDA		Mouse	PMID:5472365
Biological Process	GO:0006249	dCMP catabolic process	Upb1	IDA		Mouse	PMID:5472365
Biological Process	GO:0046079	dUMP catabolic process	Upb1	IDA		Mouse	PMID:5472365
Biological Process	GO:0001701	in utero embryonic development	Upb1	IEP		Rat	PMID:6870258|RGD:2317093
Biological Process	GO:0001889	liver development	Upb1	IDA		Rat	PMID:6870258|RGD:2317093
Biological Process	GO:0051260	protein homooligomerization	UPB1	IDA		Human	PMID:22525402
Biological Process	GO:0051289	protein homotetramerization	UPB1	IDA		Human	PMID:29976570
Biological Process	GO:0046135	pyrimidine nucleoside catabolic process	UPB1	IMP		Human	PMID:22525402
Biological Process	GO:0046050	UMP catabolic process	Upb1	IDA		Mouse	PMID:5472365

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern