Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRPM1
  • Mouse genes Trpm1
  • Rat genes Trpm1
  • Zfish genes trpm1a,trpm1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trpm1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005262	calcium channel activity	TRPM1	IDA		Human	PMID:23452348
Molecular Function	GO:0005261	monoatomic cation channel activity	Trpm1	IDA		Mouse	PMID:19966281
Cellular Component	GO:0035841	new growing cell tip	Trpm1	IDA		Mouse	PMID:19966281
Biological Process	GO:0098703	calcium ion import across plasma membrane	TRPM1	IDA		Human	PMID:23452348
Biological Process	GO:0071482	cellular response to light stimulus	TRPM1	IMP		Human	PMID:19896109
Biological Process	GO:0071482	cellular response to light stimulus	Trpm1	IMP		Mouse	MGI:MGI:4398796|PMID:19861548
Biological Process	GO:0071482	cellular response to light stimulus	Trpm1	IMP	MGI:MGI:4421441	Mouse	PMID:19966281
Biological Process	GO:0071482	cellular response to light stimulus	Trpm1	IMP		Mouse	PMID:21052544
Biological Process	GO:0007216	G protein-coupled glutamate receptor signaling pathway	TRPM1	IMP		Human	PMID:23452348
Biological Process	GO:0098655	monoatomic cation transmembrane transport	Trpm1	IDA		Mouse	MGI:MGI:4420740|PMID:19966281
Biological Process	GO:0008104	protein localization	Trpm1	IMP	MGI:MGI:3528857	Mouse	PMID:31891182
Biological Process	GO:0046548	retinal rod cell development	Trpm1	IMP	MGI:MGI:4421441	Mouse	PMID:19966281
Biological Process	GO:0007165	signal transduction	Trpm1	IGI	MGI:MGI:1351343	Mouse	PMID:19966281
Biological Process	GO:0007601	visual perception	TRPM1	IMP		Human	PMID:19878917

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern