Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM38
  • Mouse genes Trim38
  • Rat genes
  • Zfish genes si:ch211-114c12.5,si:ch211-120g10.1,si:ch73-364h19.2,si:dkey-18p12.4,si:dkey-219e21.2,zgc:194990
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim38

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P54253	Human	PMID:23275563
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:O00560	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P11142	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P40937	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P54652	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P61764	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q53SE7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q6FG85	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q7KZS0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q9H8Y8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q9UJ04	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P61764	Human	PMID:25910212
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P40937	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P40937	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P54652	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P11142	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P25789	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P34931	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P40937	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P61764	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P78317	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q13895	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q15560	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q7KZS0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q8N2W9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q8N3F0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q96H86	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q9H8Y8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:Q9UJ04	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM38	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Trim38	IPI	PR:Q9QYP6	Mouse	PMID:22539786
Molecular Function	GO:0003713	transcription coactivator activity	TRIM38	IDA		Human	PMID:23077300
Molecular Function	GO:0061630	ubiquitin protein ligase activity	Trim38	IDA		Mouse	MGI:MGI:5829625|PMID:26392463
Biological Process	GO:0050687	negative regulation of defense response to virus	Trim38	IMP		Mouse	PMID:22539786
Biological Process	GO:0051091	positive regulation of DNA-binding transcription factor activity	TRIM38	IDA		Human	PMID:23077300
Biological Process	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	TRIM38	HMP		Human	PMID:12761501
Biological Process	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	TRIM38	IDA		Human	PMID:23077300
Biological Process	GO:0051092	positive regulation of NF-kappaB transcription factor activity	TRIM38	IDA		Human	PMID:23077300
Biological Process	GO:0046598	positive regulation of viral entry into host cell	TRIM38	IDA		Human	PMID:18248090
Biological Process	GO:0045070	positive regulation of viral genome replication	Trim38	IMP		Mouse	PMID:22539786
Biological Process	GO:0045070	positive regulation of viral genome replication	Trim38	IDA		Mouse	PMID:22539786
Biological Process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Trim38	IDA		Mouse	PMID:22539786
Biological Process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Trim38	IMP		Mouse	PMID:22539786
Biological Process	GO:0070936	protein K48-linked ubiquitination	Trim38	IDA		Mouse	PMID:22539786
Biological Process	GO:0070936	protein K48-linked ubiquitination	Trim38	IMP		Mouse	PMID:22539786
Biological Process	GO:0032648	regulation of interferon-beta production	Trim38	IDA		Mouse	PMID:22539786
Biological Process	GO:0032648	regulation of interferon-beta production	Trim38	IMP		Mouse	PMID:22539786

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern