Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRAPPC4
  • Mouse genes Trappc4
  • Rat genes Trappc4
  • Zfish genes trappc4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trappc4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRAPPC4	IPI	UniProtKB:Q9CQA1	Human	PMID:17110339
Molecular Function	GO:0005515	protein binding	TRAPPC4	IPI	UniProtKB:P28482	Human	PMID:21826244
Molecular Function	GO:0005515	protein binding	Trappc4	IPI	UniProtKB:P43407	Mouse	MGI:MGI:1891560|PMID:11018053
Molecular Function	GO:0005515	protein binding	Trappc4	IPI	PR:Q5NCF2	Mouse	PMID:17027922
Cellular Component	GO:0030425	dendrite	Trappc4	IDA		Mouse	MGI:MGI:1891560|PMID:11018053
Cellular Component	GO:0005795	Golgi stack	Trappc4	IDA		Mouse	MGI:MGI:1891560|PMID:11018053
Cellular Component	GO:0045202	synapse	Trappc4	IDA		Mouse	MGI:MGI:1891560|PMID:11018053
Cellular Component	GO:0008021	synaptic vesicle	Trappc4	IDA		Mouse	MGI:MGI:1891560|PMID:11018053
Cellular Component	GO:0030008	TRAPP complex	TRAPPC4	IDA		Human	PMID:21525244
Cellular Component	GO:0030008	TRAPP complex	TRAPPC4	IMP		Human	PMID:31794024
Cellular Component	GO:0030008	TRAPP complex	Trappc4	IDA		Mouse	PMID:17027922
Biological Process	GO:0006914	autophagy	TRAPPC4	IMP		Human	PMID:31794024
Biological Process	GO:0016358	dendrite development	Trappc4	IDA		Mouse	MGI:MGI:1891560|PMID:11018053
Biological Process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	TRAPPC4	IMP		Human	PMID:31794024

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern