Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TMCC1
  • Mouse genes Tmcc1
  • Rat genes Tmcc1
  • Zfish genes tmcc1a,tmcc1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tmcc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	TMCC1	IPI	UniProtKB:O94876	Human	PMID:24454821
Molecular Function	GO:0005515	protein binding	TMCC1	IPI	UniProtKB:O75069	Human	PMID:24454821
Molecular Function	GO:0005515	protein binding	TMCC1	IPI	UniProtKB:P36578	Human	PMID:24454821
Molecular Function	GO:0005515	protein binding	TMCC1	IPI	UniProtKB:P62753	Human	PMID:24454821
Molecular Function	GO:0005515	protein binding	TMCC1	IPI	UniProtKB:Q9ULS5	Human	PMID:24454821
Cellular Component	GO:0005829	cytosol	TMCC1	IMP		Human	PMID:24454821
Cellular Component	GO:0140284	endoplasmic reticulum-endosome membrane contact site	TMCC1	IDA		Human	PMID:30220460
Cellular Component	GO:0005791	rough endoplasmic reticulum	TMCC1	IMP		Human	PMID:24454821
Biological Process	GO:0007029	endoplasmic reticulum organization	TMCC1	IMP		Human	PMID:24454821
Biological Process	GO:0016197	endosomal transport	TMCC1	IDA		Human	PMID:30220460
Biological Process	GO:0140285	endosome fission	TMCC1	IDA		Human	PMID:30220460
Biological Process	GO:0097750	endosome membrane tubulation	TMCC1	IDA		Human	PMID:30220460
Biological Process	GO:0090148	membrane fission	TMCC1	IDA		Human	PMID:30220460

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern