Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TDRD6
  • Mouse genes Tdrd6
  • Rat genes Tdrd6
  • Zfish genes tdrd6
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tdrd6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Tdrd6	IPI	UniProtKB:Q99MV2|UniProtKB:Q9D5S1	Mouse	MGI:MGI:5908497|PMID:28254886
Molecular Function	GO:0005515	protein binding	Tdrd6	IPI	UniProtKB:Q61496	Mouse	MGI:MGI:3847167|PMID:19345099
Molecular Function	GO:0005515	protein binding	Tdrd6	IPI	UniProtKB:Q8CDG1|UniProtKB:Q9JMB7	Mouse	MGI:MGI:3847167|PMID:19345099
Molecular Function	GO:0005515	protein binding	Tdrd6	IPI	PR:Q8K1H1	Mouse	PMID:17141210
Molecular Function	GO:0005515	protein binding	tdrd6	IPI	UniProtKB:H0WE55	Zfish	PMID:30086300|ZFIN:ZDB-PUB-180808-17
Molecular Function	GO:0005515	protein binding	tdrd6	IPI	ZFIN:ZDB-GENE-070117-694	Zfish	PMID:30086300
Cellular Component	GO:0033391	chromatoid body	Tdrd6	IDA		Mouse	MGI:MGI:3847167|PMID:19345099
Cellular Component	GO:0033391	chromatoid body	tdrd6	IDA		Zfish	PMID:30086300|ZFIN:ZDB-PUB-180808-17
Cellular Component	GO:0005737	cytoplasm	Tdrd6	IDA		Mouse	MGI:MGI:3847167|PMID:19345099
Cellular Component	GO:0005783	endoplasmic reticulum	Tdrd6	IDA		Mouse	PMID:17662146
Cellular Component	GO:0060293	germ plasm	tdrd6	IMP	ZFIN:ZDB-GENO-190606-6	Zfish	PMID:30086300
Cellular Component	GO:0032019	mitochondrial cloud	tdrd6	IMP	ZFIN:ZDB-GENO-190606-6	Zfish	PMID:30086300
Cellular Component	GO:0043186	P granule	Tdrd6	IDA		Mouse	PMID:16093322
Cellular Component	GO:0043186	P granule	Tdrd6	IDA		Mouse	PMID:17141210
Cellular Component	GO:0043186	P granule	tdrd6	IDA		Zfish	PMID:30086300|ZFIN:ZDB-PUB-180808-17
Cellular Component	GO:1990904	ribonucleoprotein complex	Tdrd6	IDA		Mouse	PMID:17141210
Cellular Component	GO:0045202	synapse	Tdrd6	EXP		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Tdrd6	IDA		Mouse	PMID:25211037
Biological Process	GO:0007281	germ cell development	Tdrd6	IDA		Mouse	PMID:17141210
Biological Process	GO:0007281	germ cell development	tdrd6	IDA		Zfish	PMID:30086300|ZFIN:ZDB-PUB-180808-17
Biological Process	GO:0070925	organelle assembly	tdrd6	IMP	ZFIN:ZDB-GENO-190606-6	Zfish	PMID:30086300
Biological Process	GO:1903863	P granule assembly	tdrd6	IDA		Zfish	PMID:30086300|ZFIN:ZDB-PUB-180808-17
Biological Process	GO:1905879	regulation of oogenesis	tdrd6	IDA		Zfish	PMID:30086300|ZFIN:ZDB-PUB-180808-17
Biological Process	GO:0007283	spermatogenesis	Tdrd6	IMP		Mouse	MGI:MGI:3847167|PMID:19345099
Biological Process	GO:0007283	spermatogenesis	tdrd6	IDA		Zfish	PMID:30086300|ZFIN:ZDB-PUB-180808-17
Biological Process	GO:0000387	spliceosomal snRNP assembly	Tdrd6	IMP		Mouse	MGI:MGI:5904379|PMID:28263986

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern