Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SYF2
  • Mouse genes Syf2
  • Rat genes Syf2
  • Zfish genes syf2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Syf2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SYF2	IPI	UniProtKB:O95273	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SYF2	IPI	UniProtKB:P40692	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYF2	IPI	UniProtKB:Q9H6L4	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	SYF2	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SYF2	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SYF2	IDA		Human	PMID:11991638
Cellular Component	GO:0016607	nuclear speck	SYF2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SYF2	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005634	nucleus	SYF2	IDA		Human	PMID:28076346
Cellular Component	GO:0005634	nucleus	Syf2	IDA		Mouse	PMID:12437976
Cellular Component	GO:0005634	nucleus	Syf2	IDA		Rat	PMID:24301298|RGD:10059414
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	SYF2	IDA		Human	PMID:28076346
Biological Process	GO:0048568	embryonic organ development	Syf2	IMP	MGI:MGI:3904866	Mouse	PMID:22448250
Biological Process	GO:0007369	gastrulation	Syf2	IMP	MGI:MGI:3904866	Mouse	PMID:22448250
Biological Process	GO:0001701	in utero embryonic development	Syf2	IMP	MGI:MGI:3904866	Mouse	PMID:22448250
Biological Process	GO:0007095	mitotic G2 DNA damage checkpoint signaling	Syf2	IMP	MGI:MGI:3904866	Mouse	PMID:22448250
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SYF2	IDA		Human	PMID:28076346
Biological Process	GO:0008284	positive regulation of cell population proliferation	Syf2	IMP		Rat	PMID:24301298|RGD:10059414

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern