Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes STPG4
  • Mouse genes Stpg4
  • Rat genes Stpg4
  • Zfish genes si:ch211-93n23.7
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Stpg4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Stpg4	IDA		Mouse	MGI:MGI:5762940|PMID:23560077
Molecular Function	GO:0042393	histone binding	Stpg4	IDA		Mouse	PMID:23560077
Molecular Function	GO:0005515	protein binding	Stpg4	IPI	UniProtKB:A2AA28	Mouse	MGI:MGI:6103984|PMID:28930672
Cellular Component	GO:0005737	cytoplasm	Stpg4	IDA		Mouse	PMID:16571911
Cellular Component	GO:0001674	female germ cell nucleus	Stpg4	IDA		Mouse	PMID:16571911
Cellular Component	GO:0001939	female pronucleus	Stpg4	IDA		Mouse	MGI:MGI:5762940|PMID:23560077
Cellular Component	GO:0001939	female pronucleus	Stpg4	IDA		Mouse	PMID:16571911
Cellular Component	GO:0042585	germinal vesicle	Stpg4	IDA		Mouse	MGI:MGI:5762940|PMID:23560077
Cellular Component	GO:0042585	germinal vesicle	Stpg4	IDA		Mouse	PMID:16571911
Cellular Component	GO:0001673	male germ cell nucleus	Stpg4	IDA		Mouse	PMID:16571911
Cellular Component	GO:0001940	male pronucleus	Stpg4	IDA		Mouse	MGI:MGI:5762940|PMID:23560077
Cellular Component	GO:0001940	male pronucleus	Stpg4	IDA		Mouse	PMID:16571911
Biological Process	GO:0090116	C-5 methylation of cytosine	Stpg4	IMP		Mouse	PMID:23560077
Biological Process	GO:0044727	DNA demethylation of male pronucleus	Stpg4	IMP		Mouse	MGI:MGI:6103984|PMID:28930672
Biological Process	GO:0044727	DNA demethylation of male pronucleus	Stpg4	IMP		Mouse	MGI:MGI:5762940|PMID:23560077
Biological Process	GO:1901537	positive regulation of DNA demethylation	Stpg4	IMP		Mouse	MGI:MGI:5762940|PMID:23560077

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern