Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SS18
  • Mouse genes Ss18
  • Rat genes Ss18
  • Zfish genes ss18
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ss18

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030374	nuclear receptor coactivator activity	SS18	IDA		Human	PMID:15919756
Molecular Function	GO:0005515	protein binding	SS18	IPI	UniProtKB:Q96PK6	Human	PMID:15919756
Molecular Function	GO:0005515	protein binding	SS18	IPI	UniProtKB:P15336	Human	PMID:22439931
Cellular Component	GO:0015630	microtubule cytoskeleton	Ss18	IDA		Mouse	PMID:17686994
Cellular Component	GO:0071564	npBAF complex	Ss18	IDA		Mouse	PMID:23785148
Cellular Component	GO:0016514	SWI/SNF complex	SS18	IDA		Human	PMID:29374058
Cellular Component	GO:0016514	SWI/SNF complex	Ss18	IDA		Mouse	MGI:MGI:6157116|PMID:29374058
Biological Process	GO:0000902	cell morphogenesis	Ss18	IGI	MGI:MGI:1934950	Mouse	PMID:17686994
Biological Process	GO:0000902	cell morphogenesis	Ss18	IDA		Mouse	PMID:17686994
Biological Process	GO:0000902	cell morphogenesis	Ss18	IGI	MGI:MGI:95294	Mouse	PMID:17686994
Biological Process	GO:0000902	cell morphogenesis	Ss18	IGI	MGI:MGI:1346865	Mouse	PMID:17686994
Biological Process	GO:0007010	cytoskeleton organization	Ss18	IDA		Mouse	PMID:17686994
Biological Process	GO:0048013	ephrin receptor signaling pathway	Ss18	IDA		Mouse	PMID:17686994
Biological Process	GO:0035556	intracellular signal transduction	Ss18	IDA		Mouse	PMID:17881493
Biological Process	GO:0000226	microtubule cytoskeleton organization	Ss18	IDA		Mouse	PMID:17686994
Biological Process	GO:0097150	neuronal stem cell population maintenance	Ss18	IMP		Mouse	PMID:23785148
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	SS18	IDA		Human	PMID:15919756
Biological Process	GO:0009410	response to xenobiotic stimulus	Ss18	IDA		Mouse	PMID:17686994

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern