Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNX16
  • Mouse genes Snx16
  • Rat genes Snx16
  • Zfish genes snx16
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snx16

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	SNX16	IPI	UniProtKB:P57768	Human	PMID:12813048
Molecular Function	GO:0035091	phosphatidylinositol binding	SNX16	IDA		Human	PMID:12813048
Cellular Component	GO:0005769	early endosome	SNX16	IDA		Human	PMID:12813048
Cellular Component	GO:0031313	extrinsic component of endosome membrane	SNX16	IDA		Human	PMID:12813048
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	SNX16	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005770	late endosome	SNX16	IDA		Human	PMID:12813048
Biological Process	GO:0045022	early endosome to late endosome transport	SNX16	IMP		Human	PMID:12813048
Biological Process	GO:0045022	early endosome to late endosome transport	Snx16	IDA		Rat	PMID:12813048|RGD:737670
Biological Process	GO:0008333	endosome to lysosome transport	SNX16	IMP		Human	PMID:12813048
Biological Process	GO:0006622	protein targeting to lysosome	SNX16	IMP		Human	PMID:12813048

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern