Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNRPD1
  • Mouse genes Snrpd1
  • Rat genes Snrpd1
  • Zfish genes snrpd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snrpd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:Q16637	Human	PMID:10500148
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:Q16637	Human	PMID:11135666
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:Q8TEQ6	Human	PMID:11714716
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P27958:PRO_0000037573	Human	PMID:14524621
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:Q8WXD5	Human	PMID:15939020
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P54105	Human	PMID:18984161
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:Q16637	Human	PMID:19928837
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:Q16637	Human	PMID:21816274
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P54105	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:Q16637	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P54105	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P62316	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:O14893	Human	PMID:31799625
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P62316	Human	PMID:31799625
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P54105	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNRPD1	IPI	UniProtKB:P62316	Human	PMID:9417867
Molecular Function	GO:0003723	RNA binding	SNRPD1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SNRPD1	HDA		Human	PMID:22681889
Molecular Function	GO:1990446	U1 snRNP binding	Snrpd1	IDA		Rat	PMID:16502463|RGD:10448962
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SNRPD1	IDA		Human	PMID:11991638
Cellular Component	GO:0005737	cytoplasm	Snrpd1	IDA		Mouse	PMID:15369763
Cellular Component	GO:0005829	cytosol	SNRPD1	IDA		Human	PMID:18984161
Cellular Component	GO:0034709	methylosome	SNRPD1	IDA		Human	PMID:18984161
Cellular Component	GO:0005634	nucleus	SNRPD1	IDA		Human	PMID:14524621
Cellular Component	GO:0005634	nucleus	SNRPD1	IMP		Human	PMID:14524621
Cellular Component	GO:0005634	nucleus	SNRPD1	HDA		Human	PMID:21630459
Cellular Component	GO:0005634	nucleus	SNRPD1	IDA		Human	PMID:28076346
Cellular Component	GO:0005634	nucleus	Snrpd1	IDA		Mouse	PMID:15369763
Cellular Component	GO:0005634	nucleus	Snrpd1	IDA		Rat	PMID:16502463|RGD:10448962
Cellular Component	GO:0034715	pICln-Sm protein complex	SNRPD1	IDA		Human	PMID:18984161
Cellular Component	GO:0034719	SMN-Sm protein complex	SNRPD1	IDA		Human	PMID:18984161
Cellular Component	GO:0005681	spliceosomal complex	SNRPD1	IPI		Human	PMID:33677607
Cellular Component	GO:0005685	U1 snRNP	SNRPD1	IPI		Human	PMID:33677607
Cellular Component	GO:0005685	U1 snRNP	SNRPD1	IDA		Human	PMID:21113136
Cellular Component	GO:0005685	U1 snRNP	SNRPD1	IDA		Human	PMID:25555158
Cellular Component	GO:0005685	U1 snRNP	Snrpd1	IDA		Rat	PMID:16502463|RGD:10448962
Cellular Component	GO:0005689	U12-type spliceosomal complex	SNRPD1	IDA		Human	PMID:15146077
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	SNRPD1	IDA		Human	PMID:28076346
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SNRPD1	IDA		Human	PMID:28781166
Cellular Component	GO:0005687	U4 snRNP	SNRPD1	IDA		Human	PMID:21516107
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNRPD1	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNRPD1	IDA		Human	PMID:26912367
Biological Process	GO:0007507	heart development	snrpd1	IMP	ZFIN:ZDB-GENO-020430-25	Zfish	PMID:19652097
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SNRPD1	IDA		Human	PMID:28076346
Biological Process	GO:0000387	spliceosomal snRNP assembly	SNRPD1	IDA		Human	PMID:18984161

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern