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Snrpd1 Gene Detail
Summary
  • Symbol
    Snrpd1
  • Name
    small nuclear ribonucleoprotein D1
  • Synonyms
    SMD1
  • Feature Type
    protein coding gene
  • IDs
    MGI:98344
    NCBI Gene: 20641
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:10617796-10628230 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 5.25 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98344
protein coding gene Chr18:10617775-10642079 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024149
protein coding gene Chr18:7559846-7569853 (+)
A/J MGP_AJ_G0024111
protein coding gene Chr18:7511705-7522107 (+)
AKR/J MGP_AKRJ_G0024078
protein coding gene Chr18:7700854-7711259 (+)
BALB/cJ MGP_BALBcJ_G0024110
protein coding gene Chr18:7493391-7503793 (+)
C3H/HeJ MGP_C3HHeJ_G0023877
protein coding gene Chr18:7597487-7607972 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024555
protein coding gene Chr18:8007547-8020548 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021994
protein coding gene Chr18:7174490-7185400 (+)
CAST/EiJ MGP_CASTEiJ_G0023354
protein coding gene Chr18:7497159-7507644 (+)
CBA/J MGP_CBAJ_G0023849
protein coding gene Chr18:8058698-8069100 (+)
DBA/2J MGP_DBA2J_G0023978
protein coding gene Chr18:7376415-7386855 (+)
FVB/NJ MGP_FVBNJ_G0023943
protein coding gene Chr18:7317269-7327747 (+)
LP/J MGP_LPJ_G0024061
protein coding gene Chr18:7694340-7704331 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023972
protein coding gene Chr18:8308542-8319270 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024601
protein coding gene Chr18:7535638-7546079 (+)
PWK/PhJ MGP_PWKPhJ_G0023100
protein coding gene Chr18:7411251-7424413 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022910
protein coding gene Chr18:7799800-7810218 (+)
WSB/EiJ MGP_WSBEiJ_G0023420
protein coding gene Chr18:7511466-7521868 (+)



Homology
more
  • Human Ortholog
    SNRPD1, small nuclear ribonucleoprotein D1 polypeptide
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNRPD1, small nuclear ribonucleoprotein D1 polypeptide
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HsT2456, Sm-D1, SMD1, SNRPD
  • Links
    NCBI Gene ID: 6632
    neXtProt AC: NX_P62314
    UniProt: P62314

  • Chr Location
    18q11.2; chr18:21612269-21630247 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20641 NCBI Gene Model | MGI Sequence Detail 10435 C57BL/6J ±  kb
transcript NM_009226 RefSeq | MGI Sequence Detail 837 C57BL/6  
polypeptide P62315 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 62
    cDNA 62

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-14474, MGI:2138740, MGI:2139130
References
more
  • Summaries
    All 32
    Gene Ontology 6
    Phenotypes 5
  • Earliest
    J:1159 Mitsuda T, et al., The murine Sm-D autoantigen: multiple genes, genetic polymorphism, evolutionary conservation and lack of intervening sequences in the coding region. J Autoimmun. 1992 Jun;5(3):277-87
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/26/2020
MGI 6.15
The Jackson Laboratory