Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMARCAL1
  • Mouse genes Smarcal1
  • Rat genes Smarcal1
  • Zfish genes smarcal1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smarcal1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008094	ATP-dependent activity, acting on DNA	Smarcal1	IDA		Mouse	PMID:10857751
Molecular Function	GO:0036310	ATP-dependent DNA/DNA annealing activity	SMARCAL1	IMP		Human	PMID:18974355
Molecular Function	GO:0036310	ATP-dependent DNA/DNA annealing activity	SMARCAL1	IDA		Human	PMID:22705370
Molecular Function	GO:0005515	protein binding	SMARCAL1	IPI	UniProtKB:P15927	Human	PMID:19793862
Molecular Function	GO:0005515	protein binding	SMARCAL1	IPI	UniProtKB:P15927	Human	PMID:19793863
Molecular Function	GO:0005515	protein binding	SMARCAL1	IPI	UniProtKB:P15927	Human	PMID:24126761
Molecular Function	GO:0005515	protein binding	SMARCAL1	IPI	UniProtKB:P15927	Human	PMID:24910198
Molecular Function	GO:0005515	protein binding	SMARCAL1	IPI	UniProtKB:P15927	Human	PMID:24981860
Cellular Component	GO:0005654	nucleoplasm	SMARCAL1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SMARCAL1	IDA		Human	PMID:18974355
Cellular Component	GO:0035861	site of double-strand break	SMARCAL1	IDA		Human	PMID:19793862
Cellular Component	GO:0035861	site of double-strand break	SMARCAL1	IDA		Human	PMID:19793863
Biological Process	GO:0001525	angiogenesis	smarcal1	IMP	ZFIN:ZDB-MRPHLNO-100419-14	Zfish	PMID:20036229
Biological Process	GO:0051216	cartilage development	smarcal1	IMP	ZFIN:ZDB-MRPHLNO-100419-14	Zfish	PMID:20036229
Biological Process	GO:0048589	developmental growth	smarcal1	IMP	ZFIN:ZDB-MRPHLNO-100419-14	Zfish	PMID:20036229
Biological Process	GO:0006974	DNA damage response	SMARCAL1	IMP		Human	PMID:19793862
Biological Process	GO:0006303	double-strand break repair via nonhomologous end joining	SMARCAL1	IMP		Human	PMID:26089390
Biological Process	GO:0010172	embryonic body morphogenesis	smarcal1	IMP	ZFIN:ZDB-MRPHLNO-100419-14	Zfish	PMID:20036229
Biological Process	GO:0010172	embryonic body morphogenesis	smarcal1	IMP	ZFIN:ZDB-MRPHLNO-100419-15	Zfish	PMID:20036229
Biological Process	GO:0030097	hemopoiesis	smarcal1	IMP	ZFIN:ZDB-MRPHLNO-100419-14	Zfish	PMID:20036229
Biological Process	GO:0000278	mitotic cell cycle	smarcal1	IMP	ZFIN:ZDB-MRPHLNO-100419-14	Zfish	PMID:20036229
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	SMARCAL1	IMP		Human	PMID:18974355
Biological Process	GO:0031297	replication fork processing	SMARCAL1	IMP		Human	PMID:19793862

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern