Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SLBP
  • Mouse genes Slbp
  • Rat genes Slbp
  • Zfish genes slbp
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Slbp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0071207	histone pre-mRNA stem-loop binding	Slbp	IDA		Mouse	MGI:MGI:4353869|PMID:19470752
Molecular Function	GO:0042802	identical protein binding	SLBP	IPI	UniProtKB:Q14493	Human	PMID:23286197
Molecular Function	GO:0003729	mRNA binding	SLBP	IDA		Human	PMID:16912046
Molecular Function	GO:0003729	mRNA binding	Slbp	IDA		Mouse	PMID:15358832
Molecular Function	GO:0005515	protein binding	SLBP	IPI	UniProtKB:Q9Y5L0	Human	PMID:15829567
Molecular Function	GO:0005515	protein binding	SLBP	IPI	UniProtKB:Q92900	Human	PMID:16086026
Molecular Function	GO:0005515	protein binding	SLBP	IPI	UniProtKB:O15116	Human	PMID:18172165
Molecular Function	GO:0005515	protein binding	SLBP	IPI	UniProtKB:A9UHW6	Human	PMID:23286197
Molecular Function	GO:0005515	protein binding	SLBP	IPI	UniProtKB:Q8IV48	Human	PMID:23329046
Molecular Function	GO:0005515	protein binding	SLBP	IPI	UniProtKB:A9UHW6	Human	PMID:23804756
Molecular Function	GO:0003723	RNA binding	SLBP	HDA		Human	PMID:22658674
Cellular Component	GO:0005737	cytoplasm	SLBP	IDA		Human	PMID:15829567
Cellular Component	GO:0005737	cytoplasm	Slbp	IDA		Mouse	PMID:15358832
Cellular Component	GO:0005829	cytosol	SLBP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0062073	histone mRNA stem-loop binding complex	SLBP	IPI		Human	PMID:23286197
Cellular Component	GO:0071204	histone pre-mRNA 3'end processing complex	Slbp	IDA		Mouse	MGI:MGI:4353869|PMID:19470752
Cellular Component	GO:0005730	nucleolus	SLBP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SLBP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SLBP	IDA		Human	PMID:15829567
Cellular Component	GO:0005634	nucleus	Slbp	IDA		Mouse	PMID:15358832
Cellular Component	GO:1990904	ribonucleoprotein complex	Slbp	IDA		Mouse	PMID:15358832
Biological Process	GO:0048854	brain morphogenesis	slbp	IMP	ZFIN:ZDB-GENO-980202-169	Zfish	PMID:9007241
Biological Process	GO:0002191	cap-dependent translational initiation	SLBP	IDA		Human	PMID:18025107
Biological Process	GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	Slbp	IDA		Mouse	MGI:MGI:4353869|PMID:19470752
Biological Process	GO:0051028	mRNA transport	SLBP	IDA		Human	PMID:19155325
Biological Process	GO:0003407	neural retina development	slbp	IMP	ZFIN:ZDB-GENO-150115-8	Zfish	PMID:25106852
Biological Process	GO:0030182	neuron differentiation	slbp	IMP	ZFIN:ZDB-GENO-980202-169	Zfish	PMID:30695021
Biological Process	GO:0046530	photoreceptor cell differentiation	slbp	IMP	ZFIN:ZDB-GENO-150115-8	Zfish	PMID:25106852
Biological Process	GO:0031290	retinal ganglion cell axon guidance	slbp	IMP	ZFIN:ZDB-GENO-150115-8	Zfish	PMID:25106852

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern