Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SGCD
  • Mouse genes Sgcd
  • Rat genes Sgcd
  • Zfish genes sgcd
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sgcd

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Sgcd	IPI	PR:P82349	Mouse	PMID:16524571
Molecular Function	GO:0005515	protein binding	Sgcd	IPI	PR:P82348	Mouse	PMID:12189167
Molecular Function	GO:0005515	protein binding	Sgcd	IPI	PR:Q8BX51	Mouse	PMID:12189167
Cellular Component	GO:0016011	dystroglycan complex	Sgcd	IDA		Mouse	PMID:10678176
Cellular Component	GO:0016010	dystrophin-associated glycoprotein complex	SGCD	IDA		Human	PMID:17993586
Cellular Component	GO:0005886	plasma membrane	Sgcd	IDA		Mouse	PMID:17164264
Cellular Component	GO:0005886	plasma membrane	Sgcd	IDA		Mouse	PMID:10481911
Cellular Component	GO:0005886	plasma membrane	Sgcd	IDA		Mouse	PMID:16524571
Cellular Component	GO:0016012	sarcoglycan complex	Sgcd	IDA		Mouse	PMID:16524571
Cellular Component	GO:0016012	sarcoglycan complex	Sgcd	IDA		Mouse	PMID:12189167
Cellular Component	GO:0042383	sarcolemma	Sgcd	IDA		Mouse	PMID:16403451
Cellular Component	GO:0042383	sarcolemma	Sgcd	IDA		Mouse	PMID:10481911
Cellular Component	GO:0042383	sarcolemma	Sgcd	IDA		Mouse	PMID:10678176
Cellular Component	GO:0042383	sarcolemma	sgcd	IDA		Zfish	PMID:15707578
Cellular Component	GO:0016529	sarcoplasmic reticulum	Sgcd	IDA		Mouse	PMID:19931597
Cellular Component	GO:0016529	sarcoplasmic reticulum	Sgcd	IDA		Mouse	PMID:16403451
Biological Process	GO:0055074	calcium ion homeostasis	Sgcd	IMP	MGI:MGI:2180193	Mouse	PMID:19931597
Biological Process	GO:0019722	calcium-mediated signaling	Sgcd	IMP	MGI:MGI:2180193	Mouse	PMID:19931597
Biological Process	GO:0086003	cardiac muscle cell contraction	Sgcd	IMP	MGI:MGI:2154694	Mouse	PMID:10481911
Biological Process	GO:0055013	cardiac muscle cell development	Sgcd	IMP	MGI:MGI:2180193	Mouse	PMID:23695275
Biological Process	GO:0060048	cardiac muscle contraction	Sgcd	IMP	MGI:MGI:2180193	Mouse	PMID:23695275
Biological Process	GO:0048738	cardiac muscle tissue development	sgcd	IMP	ZFIN:ZDB-MRPHLNO-060703-1	Zfish	PMID:16650823
Biological Process	GO:0060977	coronary vasculature morphogenesis	Sgcd	IMP	MGI:MGI:2154694	Mouse	PMID:10481911
Biological Process	GO:0007368	determination of left/right symmetry	sgcd	IMP	ZFIN:ZDB-MRPHLNO-060703-1	Zfish	PMID:16650823
Biological Process	GO:0060047	heart contraction	sgcd	IMP	ZFIN:ZDB-MRPHLNO-100114-1	Zfish	PMID:19800866
Biological Process	GO:0003015	heart process	Sgcd	IMP	MGI:MGI:2180193	Mouse	PMID:23695275
Biological Process	GO:0031503	protein-containing complex localization	Sgcd	IMP	MGI:MGI:2154694	Mouse	PMID:10481911
Biological Process	GO:0031503	protein-containing complex localization	Sgcd	IMP	MGI:MGI:5911918	Mouse	PMID:17164264
Biological Process	GO:0007525	somatic muscle development	sgcd	IMP	ZFIN:ZDB-MRPHLNO-060703-1	Zfish	PMID:16650823
Biological Process	GO:0048798	swim bladder inflation	sgcd	IMP	ZFIN:ZDB-MRPHLNO-060505-3	Zfish	PMID:15707578
Biological Process	GO:0048798	swim bladder inflation	sgcd	IMP	ZFIN:ZDB-MRPHLNO-060505-2	Zfish	PMID:15707578

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern