Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SEMA6C
  • Mouse genes Sema6c
  • Rat genes Sema6c
  • Zfish genes sema6d,sema6e
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sema6c

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0045499	chemorepellent activity	sema6e	IDA		Zfish	PMID:21094219
Molecular Function	GO:0030215	semaphorin receptor binding	Sema6c	IPI	PR:P70206	Mouse	PMID:17145500
Biological Process	GO:0007411	axon guidance	Sema6c	IDA		Rat	PMID:10049528|RGD:69992
Biological Process	GO:0050919	negative chemotaxis	sema6e	IDA		Zfish	PMID:21094219|ZFIN:ZDB-PUB-101201-6
Biological Process	GO:0002072	optic cup morphogenesis involved in camera-type eye development	sema6d	IMP	ZFIN:ZDB-GENO-220629-3	Zfish	PMID:33811086
Biological Process	GO:0007165	signal transduction	sema6e	IDA		Zfish	PMID:21094219|ZFIN:ZDB-PUB-101201-6

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern