Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SDR16C5
  • Mouse genes Sdr16c5
  • Rat genes Sdr16c5
  • Zfish genes sdr16c5a,sdr16c5b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sdr16c5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0140297	DNA-binding transcription factor binding	SDR16C5	IPI	UniProtKB:P08047	Human	PMID:16691198
Molecular Function	GO:0004745	NAD-retinol dehydrogenase activity	SDR16C5	IDA		Human	PMID:18926804
Molecular Function	GO:0004745	NAD-retinol dehydrogenase activity	SDR16C5	IDA		Human	PMID:19102727
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:P49638	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q05329	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q08426	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q13596	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q17RD7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q9BWH2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q9HC62	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q9UBD0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDR16C5	IPI	UniProtKB:Q9ULP0-2	Human	PMID:32296183
Molecular Function	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	SDR16C5	IPI	UniProtKB:Q06330	Human	PMID:16691198
Molecular Function	GO:0003714	transcription corepressor activity	SDR16C5	IDA		Human	PMID:16691198
Cellular Component	GO:0000785	chromatin	SDR16C5	IDA		Human	PMID:16691198
Cellular Component	GO:0005783	endoplasmic reticulum	SDR16C5	IDA		Human	PMID:16691198
Cellular Component	GO:0005789	endoplasmic reticulum membrane	SDR16C5	IDA		Human	PMID:18926804
Cellular Component	GO:0005634	nucleus	SDR16C5	IDA		Human	PMID:16691198
Cellular Component	GO:0005886	plasma membrane	SDR16C5	IDA		Human	PMID:16691198
Cellular Component	GO:0017053	transcription repressor complex	SDR16C5	IDA		Human	PMID:16691198
Biological Process	GO:0043616	keratinocyte proliferation	SDR16C5	IMP		Human	PMID:12372410
Biological Process	GO:0045814	negative regulation of gene expression, epigenetic	SDR16C5	IDA		Human	PMID:16691198
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	SDR16C5	IMP		Human	PMID:16691198
Biological Process	GO:0042574	retinal metabolic process	SDR16C5	IDA		Human	PMID:18926804
Biological Process	GO:0042574	retinal metabolic process	SDR16C5	IDA		Human	PMID:19102727
Biological Process	GO:0042572	retinol metabolic process	SDR16C5	IDA		Human	PMID:18926804
Biological Process	GO:0042572	retinol metabolic process	SDR16C5	IDA		Human	PMID:19102727

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern