Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SDC3
  • Mouse genes Sdc3
  • Rat genes Sdc3
  • Zfish genes sdc3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sdc3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	SDC3	IPI	UniProtKB:O75056	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	SDC3	IPI	UniProtKB:P31431	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	SDC3	IPI	UniProtKB:P34741	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	UniProtKB:P21741	Mouse	MGI:MGI:6294834|PMID:12084985
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	RGD:3168	Rat	PMID:11356864|RGD:1599282
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	UniProtKB:P34900	Rat	PMID:11356864|RGD:1599282
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	UniProtKB:D3ZTD8	Rat	PMID:15603739|RGD:8553809
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	UniProtKB:P34900	Rat	PMID:26601939|RGD:13825434
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	RGD:3444	Rat	PMID:8175719|RGD:10043820
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	UniProtKB:P12025	Rat	PMID:9089390|RGD:14397574
Molecular Function	GO:0005515	protein binding	Sdc3	IPI	UniProtKB:P63090	Rat	PMID:9817766|RGD:14397563
Cellular Component	GO:0030424	axon	Sdc3	IDA		Rat	PMID:11356864|RGD:1599282
Cellular Component	GO:0062023	collagen-containing extracellular matrix	SDC3	HDA		Human	PMID:27068509
Cellular Component	GO:0016020	membrane	Sdc3	IDA		Rat	PMID:15603739|RGD:8553809
Cellular Component	GO:0044393	microspike	Sdc3	IDA		Mouse	MGI:MGI:6294834|PMID:12084985
Cellular Component	GO:0043005	neuron projection	Sdc3	IDA		Rat	PMID:11356864|RGD:1599282
Cellular Component	GO:0005886	plasma membrane	Sdc3	IDA		Rat	PMID:8175719|RGD:10043820
Cellular Component	GO:0032991	protein-containing complex	Sdc3	IDA		Rat	PMID:11356864|RGD:1599282
Biological Process	GO:0007155	cell adhesion	Sdc3	IDA		Rat	PMID:11751872|RGD:625469
Biological Process	GO:0055113	epiboly involved in gastrulation with mouth forming second	sdc3	IMP	ZFIN:ZDB-MRPHLNO-120427-1	Zfish	PMID:22399807
Biological Process	GO:0030334	regulation of cell migration	Sdc3	IDA		Rat	PMID:24555114|RGD:10047387

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern