Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RTN3
  • Mouse genes Rtn3
  • Rat genes Rtn3
  • Zfish genes rtn3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rtn3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:P56817	Human	PMID:15286784
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:P43378	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q9Y5P4	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q13158	Human	PMID:19364499
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:P54274	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:P33175	Human	PMID:21976701
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q5T4F4	Human	PMID:21976701
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:O14735	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:P43378	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q13596	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q6IQ43	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q969Q6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q9Y5P4	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:P43378	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RTN3	IPI	UniProtKB:Q9Y5P4	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	Rtn3	IPI	UniProtKB:Q8NHH9	Mouse	MGI:MGI:4359556|PMID:19665976
Molecular Function	GO:0005515	protein binding	Rtn3	IPI	UniProtKB:P57088	Mouse	MGI:MGI:5700283|PMID:25612671
Molecular Function	GO:0005515	protein binding	Rtn3	IPI	UniProtKB:Q6PST4|UniProtKB:Q8NHH9|UniProtKB:Q8WXF7	Mouse	MGI:MGI:4359556|PMID:19665976
Molecular Function	GO:0005515	protein binding	Rtn3	IPI	UniProtKB:Q8WXF7	Mouse	MGI:MGI:4359556|PMID:19665976
Cellular Component	GO:0005783	endoplasmic reticulum	RTN3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	RTN3	IDA		Human	PMID:15286784
Cellular Component	GO:0005789	endoplasmic reticulum membrane	RTN3	IDA		Human	PMID:24262037
Cellular Component	GO:0098978	glutamatergic synapse	Rtn3	IDA		Rat	PMID:14746891|RGD:155230709
Cellular Component	GO:0005794	Golgi apparatus	RTN3	IDA		Human	PMID:15286784
Cellular Component	GO:0098793	presynapse	Rtn3	IDA		Rat	PMID:14746891|RGD:155230709
Cellular Component	GO:0045202	synapse	Rtn3	EXP		Mouse	PMID:16452087
Cellular Component	GO:0045202	synapse	Rtn3	IDA		Mouse	PMID:16452087
Biological Process	GO:0071787	endoplasmic reticulum tubular network formation	RTN3	IDA		Human	PMID:25612671
Biological Process	GO:0071787	endoplasmic reticulum tubular network formation	Rtn3	IDA		Mouse	MGI:MGI:5770041|PMID:24262037
Biological Process	GO:0071786	endoplasmic reticulum tubular network organization	RTN3	IMP		Human	PMID:18779370
Biological Process	GO:1902430	negative regulation of amyloid-beta formation	RTN3	IDA		Human	PMID:15286784

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern