Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RTN1
  • Mouse genes Rtn1
  • Rat genes Rtn1
  • Zfish genes rtn1a,rtn1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rtn1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RTN1	IPI	UniProtKB:Q16739	Human	PMID:12873973
Molecular Function	GO:0005515	protein binding	RTN1	IPI	UniProtKB:P56817	Human	PMID:15286784
Molecular Function	GO:0005515	protein binding	RTN1	IPI	UniProtKB:Q96BZ9	Human	PMID:17684057
Molecular Function	GO:0005515	protein binding	RTN1	IPI	UniProtKB:Q92597	Human	PMID:17786215
Cellular Component	GO:0030425	dendrite	Rtn1	IDA		Mouse	PMID:28733667
Cellular Component	GO:0005783	endoplasmic reticulum	RTN1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	RTN1	IDA		Human	PMID:12873973
Cellular Component	GO:0005783	endoplasmic reticulum	Rtn1	IDA		Mouse	PMID:12036513
Cellular Component	GO:0000139	Golgi membrane	RTN1	IDA		Human	PMID:12873973
Cellular Component	GO:0043025	neuronal cell body	Rtn1	IDA		Mouse	PMID:28733667
Cellular Component	GO:0005790	smooth endoplasmic reticulum	Rtn1	IDA		Rat	PMID:23454728|RGD:8693349
Biological Process	GO:1902430	negative regulation of amyloid-beta formation	RTN1	IDA		Human	PMID:15286784

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern