Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPL6
  • Mouse genes Rpl6
  • Rat genes Rpl6,Rpl6-ps1,Rpl6-ps6
  • Zfish genes rpl6
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rpl6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1990932	5.8S rRNA binding	Rpl6	IDA		Rat	PMID:468846|RGD:11036085
Molecular Function	GO:0045296	cadherin binding	RPL6	HDA		Human	PMID:25468996
Molecular Function	GO:0003729	mRNA binding	Rpl6	IDA		Rat	PMID:7338522|RGD:11040966
Molecular Function	GO:0005515	protein binding	RPL6	IPI	UniProtKB:Q99558	Human	PMID:14743216
Molecular Function	GO:0005515	protein binding	RPL6	IPI	UniProtKB:Q99558	Human	PMID:31980649
Molecular Function	GO:0003723	RNA binding	RPL6	HDA		Human	PMID:22658674
Molecular Function	GO:0003735	structural constituent of ribosome	RPL6	IDA		Human	PMID:23636399
Molecular Function	GO:0003735	structural constituent of ribosome	RPL6	IDA		Human	PMID:32669547
Molecular Function	GO:0003735	structural constituent of ribosome	Rpl6	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Molecular Function	GO:0000049	tRNA binding	Rpl6	IDA		Rat	PMID:7118887|RGD:11039446
Cellular Component	GO:0031672	A band	Rpl6	IDA		Rat	PMID:2188648|RGD:11036104
Cellular Component	GO:0036464	cytoplasmic ribonucleoprotein granule	RPL6	IDA		Human	PMID:15121898
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL6	IPI		Human	PMID:25901680
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL6	HDA		Human	PMID:12962325
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL6	IDA		Human	PMID:25957688
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL6	IDA		Human	PMID:32669547
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl6	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl6	IPI		Mouse	MGI:MGI:6810796|PMID:25901680
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl6	IDA		Rat	PMID:3730400|RGD:11036081
Cellular Component	GO:0022626	cytosolic ribosome	RPL6	IDA		Human	PMID:23636399
Cellular Component	GO:0005925	focal adhesion	RPL6	HDA		Human	PMID:21423176
Cellular Component	GO:0016020	membrane	RPL6	HDA		Human	PMID:19946888
Cellular Component	GO:0005634	nucleus	RPL6	HDA		Human	PMID:21630459
Cellular Component	GO:0005634	nucleus	RPL6	IDA		Human	PMID:25468996
Cellular Component	GO:0042788	polysomal ribosome	RPL6	IDA		Human	PMID:25957688
Cellular Component	GO:0014069	postsynaptic density	Rpl6	EXP		Mouse	PMID:15169875
Cellular Component	GO:0014069	postsynaptic density	Rpl6	IDA		Mouse	PMID:15169875
Cellular Component	GO:0045202	synapse	Rpl6	IDA		Mouse	PMID:16635246
Cellular Component	GO:0045202	synapse	Rpl6	EXP		Mouse	PMID:16635246
Biological Process	GO:0043009	chordate embryonic development	rpl6	IMP	ZFIN:ZDB-MRPHLNO-070327-6	Zfish	PMID:17183665
Biological Process	GO:0002181	cytoplasmic translation	RPL6	IDA		Human	PMID:25957688
Biological Process	GO:0031016	pancreas development	rpl6	IMP	ZFIN:ZDB-GENO-130823-17	Zfish	PMID:23697888

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern