Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPL39
  • Mouse genes Rpl39
  • Rat genes LOC103690821,LOC103694404,Rpl39,Rpl39-ps10,Rpl39-ps11,Rpl39-ps12,Rpl39-ps13
  • Zfish genes rpl39
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rpl39

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Rpl39	IPI	UniProtKB:P25637	Mouse	MGI:MGI:5700292|PMID:22404850
Molecular Function	GO:0003735	structural constituent of ribosome	RPL39	IDA		Human	PMID:23636399
Molecular Function	GO:0003735	structural constituent of ribosome	RPL39	IDA		Human	PMID:32669547
Molecular Function	GO:0003735	structural constituent of ribosome	Rpl39	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL39	HDA		Human	PMID:12962325
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL39	IDA		Human	PMID:25957688
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL39	IDA		Human	PMID:32669547
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl39	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl39	IPI		Mouse	MGI:MGI:6810796|PMID:25901680
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl39	IDA		Rat	PMID:1002715|RGD:11036093
Cellular Component	GO:0022626	cytosolic ribosome	RPL39	IDA		Human	PMID:23636399
Cellular Component	GO:0005615	extracellular space	RPL39	IDA		Human	PMID:12860195
Cellular Component	GO:0042788	polysomal ribosome	RPL39	IDA		Human	PMID:25957688
Biological Process	GO:0019731	antibacterial humoral response	RPL39	IDA		Human	PMID:12860195
Biological Process	GO:0061844	antimicrobial humoral immune response mediated by antimicrobial peptide	RPL39	IDA		Human	PMID:12860195
Biological Process	GO:0002181	cytoplasmic translation	RPL39	IDA		Human	PMID:25957688
Biological Process	GO:0002181	cytoplasmic translation	Rpl39	IMP		Mouse	MGI:MGI:7432477|PMID:34428590
Biological Process	GO:0050830	defense response to Gram-positive bacterium	RPL39	IDA		Human	PMID:12860195
Biological Process	GO:0002227	innate immune response in mucosa	RPL39	IDA		Human	PMID:12860195

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern