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Rpl39 Gene Detail
Summary
  • Symbol
    Rpl39
  • Name
    ribosomal protein L39
  • Synonyms
    2810465O16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914498
    NCBI Gene: 67248
  • Gene Overview
    MyGene.info: RPL39
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:37082518-37085222 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 21.50 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914498
protein coding gene ChrX:37082518-37085402 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035630
protein coding gene ChrX:32029580-32032462 (-)
A/J MGP_AJ_G0035607
protein coding gene ChrX:32083208-32084731 (-)
AKR/J MGP_AKRJ_G0035540
protein coding gene ChrX:32811318-32814200 (-)
BALB/cJ MGP_BALBcJ_G0035600
protein coding gene ChrX:31817494-31820376 (-)
C3H/HeJ MGP_C3HHeJ_G0035318
protein coding gene ChrX:32338557-32341439 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036136
protein coding gene ChrX:32662019-32664901 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032998
protein coding gene ChrX:30300698-30303813 (-)
CAST/EiJ MGP_CASTEiJ_G0034608
protein coding gene ChrX:20498643-20501526 (-)
CBA/J MGP_CBAJ_G0035287
protein coding gene ChrX:33524215-33527097 (-)
DBA/2J MGP_DBA2J_G0035438
protein coding gene ChrX:31908102-31910984 (-)
FVB/NJ MGP_FVBNJ_G0035385
protein coding gene ChrX:31675634-31678516 (-)
LP/J MGP_LPJ_G0035520
protein coding gene ChrX:32390993-32393875 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035429
protein coding gene ChrX:33972013-33974895 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036143
protein coding gene ChrX:31995835-31998717 (-)
PWK/PhJ MGP_PWKPhJ_G0034310
protein coding gene ChrX:19950476-19953466 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034151
protein coding gene ChrX:20978911-20981799 (-)
WSB/EiJ MGP_WSBEiJ_G0034744
protein coding gene ChrX:31788860-31791742 (-)



Homology
more
  • Human Ortholog
    RPL39, ribosomal protein L39
  • Vertebrate Orthologs
    11
  • Human Ortholog
    RPL39, ribosomal protein L39
    Orthology source: HomoloGene, HGNC
  • Synonyms
    L39, RPL39_23_1806, RPL39P42
  • Links
    NCBI Gene ID: 6170
    neXtProt AC: NX_P62891
    UniProt: P62891

  • Chr Location
    Xq24; chrX:119786504-119791659 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67248 NCBI Gene Model | MGI Sequence Detail 2705 C57BL/6J ±  kb
transcript NM_026055 RefSeq | MGI Sequence Detail 434 C57BL/6  
polypeptide P62892 UniProt | EBI | MGI Sequence Detail 51 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR000077 Ribosomal protein L39e
    IPR020083 Ribosomal protein L39e, conserved site
    IPR023626 Ribosomal protein L39e domain superfamily
Molecular
Reagents
less
  • All nucleic 315
    cDNA 315

    Microarray probesets 5
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 7
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:227376 Waller T, et al., Evidence that Yih1 resides in a complex with ribosomes. FEBS J. 2012 May;279(10):1761-76

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory