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Rpl39 Gene Detail
Summary
  • Symbol
    Rpl39
  • Name
    ribosomal protein L39
  • Synonyms
    2810465O16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914498
    NCBI Gene: 67248
  • Gene Overview
    MyGene.info: RPL39
Location & Maps
more
  • Sequence Map
    ChrX:37082520-37085402 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      2883 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome X, 21.50 cM, cytoband F3
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RPL39, ribosomal protein L39
  • Vertebrate Orthologs
    11
  • Human Ortholog
    RPL39, ribosomal protein L39
    Orthology source: HGNC, HomoloGene
  • Synonyms
    L39, RPL39_23_1806, RPL39P42
  • Links
    NCBI Gene ID: 6170
    neXtProt AC: NX_P62891

  • Chr Location
    Xq24; chrX:119786504-119791659 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    5
  • Gene trapped
    3
  • Targeted
    2
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017100 VEGA Gene Model | MGI Sequence Detail 2883 C57BL/6J ±  kb
transcript OTTMUST00000041420 VEGA | MGI Sequence Detail 612 Not Applicable  
polypeptide OTTMUSP00000018582 VEGA | MGI Sequence Detail 51 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR000077 Ribosomal protein L39e
    IPR020083 Ribosomal protein L39e, conserved site
    IPR023626 Ribosomal protein L39e domain
Molecular
Reagents
less
  • All nucleic 315
    cDNA 315

    Microarray probesets 5
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:227376 Waller T, et al., Evidence that Yih1 resides in a complex with ribosomes. FEBS J. 2012 May;279(10):1761-76

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory