Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ROM1
  • Mouse genes Rom1
  • Rat genes Rom1
  • Zfish genes rom1a,rom1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rom1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	ROM1	IPI	UniProtKB:P78329	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ROM1	IPI	UniProtKB:Q8N138	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ROM1	IPI	UniProtKB:Q9HB07	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rom1	IPI	PR:P15499	Mouse	PMID:20055437
Molecular Function	GO:0005515	protein binding	Rom1	IPI	PR:P15499	Mouse	PMID:26420485
Molecular Function	GO:0042803	protein homodimerization activity	Rom1	IPI	PR:P32958	Mouse	PMID:26420485
Molecular Function	GO:0042803	protein homodimerization activity	Rom1	IPI	PR:P32958	Mouse	PMID:20055437
Cellular Component	GO:0001750	photoreceptor outer segment	Rom1	IDA		Mouse	PMID:22183407
Cellular Component	GO:0001750	photoreceptor outer segment	Rom1	IDA		Mouse	PMID:26420485
Cellular Component	GO:0001750	photoreceptor outer segment	Rom1	IDA		Mouse	PMID:20592197
Cellular Component	GO:0042622	photoreceptor outer segment membrane	Rom1	IDA		Mouse	MGI:MGI:3814988|PMID:18654668
Biological Process	GO:0060219	camera-type eye photoreceptor cell differentiation	Rom1	IMP		Mouse	PMID:20300562
Biological Process	GO:0050908	detection of light stimulus involved in visual perception	Rom1	IGI	MGI:MGI:102791	Mouse	PMID:28053051
Biological Process	GO:0035845	photoreceptor cell outer segment organization	Rom1	IGI	MGI:MGI:102791	Mouse	PMID:28053051
Biological Process	GO:0035845	photoreceptor cell outer segment organization	Rom1	IMP	MGI:MGI:2181662	Mouse	PMID:28053051
Biological Process	GO:0051291	protein heterooligomerization	Rom1	IPI	PR:P15499	Mouse	PMID:20055437
Biological Process	GO:0051260	protein homooligomerization	Rom1	IPI	PR:P32958	Mouse	PMID:20055437
Biological Process	GO:1903546	protein localization to photoreceptor outer segment	Rom1	IDA		Mouse	PMID:28053051
Biological Process	GO:1903546	protein localization to photoreceptor outer segment	Rom1	IMP	MGI:MGI:2181662	Mouse	PMID:28053051
Biological Process	GO:0010468	regulation of gene expression	Rom1	IMP		Mouse	PMID:20300562
Biological Process	GO:0060041	retina development in camera-type eye	Rom1	IGI	MGI:MGI:102791	Mouse	PMID:28053051
Biological Process	GO:0060041	retina development in camera-type eye	Rom1	IMP	MGI:MGI:2181662	Mouse	PMID:28053051
Biological Process	GO:0060042	retina morphogenesis in camera-type eye	Rom1	IMP		Mouse	PMID:20300562
Biological Process	GO:0061298	retina vasculature development in camera-type eye	Rom1	IMP		Mouse	PMID:20300562

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern