Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RNF13
  • Mouse genes Rnf13
  • Rat genes Rnf13
  • Zfish genes rnf13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rnf13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008432	JUN kinase binding	RNF13	IDA		Human	PMID:23378536
Molecular Function	GO:0005515	protein binding	RNF13	IPI	UniProtKB:P61088	Human	PMID:19690564
Molecular Function	GO:0005515	protein binding	RNF13	IPI	UniProtKB:P61088	Human	PMID:25260751
Molecular Function	GO:0061630	ubiquitin protein ligase activity	Rnf13	IDA		Mouse	PMID:19292867
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	Rnf13	IDA		Mouse	MGI:MGI:3844769|PMID:19292867
Cellular Component	GO:0005829	cytosol	RNF13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	RNF13	IDA		Human	PMID:23378536
Cellular Component	GO:0005768	endosome	RNF13	IDA		Human	PMID:24387786
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	RNF13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0031902	late endosome membrane	Rnf13	IDA		Mouse	MGI:MGI:3844769|PMID:19292867
Cellular Component	GO:0005765	lysosomal membrane	RNF13	HDA		Human	PMID:17897319
Cellular Component	GO:0005765	lysosomal membrane	Rnf13	IDA		Mouse	MGI:MGI:3844769|PMID:19292867
Cellular Component	GO:0005654	nucleoplasm	RNF13	IDA		Human	GO_REF:0000052
Biological Process	GO:0051640	organelle localization	RNF13	IMP		Human	PMID:24387786
Biological Process	GO:0070304	positive regulation of stress-activated protein kinase signaling cascade	RNF13	IMP		Human	PMID:23378536
Biological Process	GO:0051865	protein autoubiquitination	Rnf13	IDA		Mouse	MGI:MGI:3844769|PMID:19292867

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern