Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RCL1
  • Mouse genes Rcl1
  • Rat genes Rcl1
  • Zfish genes rcl1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rcl1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RCL1	IPI	UniProtKB:Q08379	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	rcl1	IPI	ZFIN:ZDB-GENE-060720-2	Zfish	PMID:27474224
Cellular Component	GO:0005730	nucleolus	Rcl1	IDA		Mouse	PMID:10790377
Cellular Component	GO:0005730	nucleolus	rcl1	IDA		Zfish	PMID:27474224
Biological Process	GO:0000469	cleavage involved in rRNA processing	rcl1	IMP	ZFIN:ZDB-GENO-221014-1	Zfish	PMID:34019640
Biological Process	GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Rcl1	IMP		Mouse	PMID:25190460
Biological Process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Rcl1	IMP		Mouse	PMID:25190460
Biological Process	GO:0001889	liver development	rcl1	IMP	ZFIN:ZDB-GENO-221014-1	Zfish	PMID:34019640
Biological Process	GO:0001889	liver development	rcl1	IMP	ZFIN:ZDB-GENO-221014-2	Zfish	PMID:34019640
Biological Process	GO:0031016	pancreas development	rcl1	IMP	ZFIN:ZDB-GENO-221014-1	Zfish	PMID:34019640

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern