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Rcl1 Gene Detail
Summary
  • Symbol
    Rcl1
  • Name
    RNA terminal phosphate cyclase-like 1
  • Synonyms
    2310040A02Rik, Rnac, RPCL1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913275
    NCBI Gene: 59028
  • Gene Overview
    MyGene.info: RCL1
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:29101375-29143843 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 23.61 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    549 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913275
protein coding gene Chr19:29101375-29143851 (.)
129S1/SvImJ MGP_129S1SvImJ_G0025017
protein coding gene Chr19:27538871-27582118 (+)
A/J MGP_AJ_G0024994
protein coding gene Chr19:26149593-26192051 (+)
AKR/J MGP_AKRJ_G0024962
protein coding gene Chr19:27098405-27140791 (+)
BALB/cJ MGP_BALBcJ_G0024993
protein coding gene Chr19:26200905-26243369 (+)
C3H/HeJ MGP_C3HHeJ_G0024749
protein coding gene Chr19:27071380-27120749 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025434
protein coding gene Chr19:28290534-28334294 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022853
protein coding gene Chr19:26122182-26164510 (+)
CAST/EiJ MGP_CASTEiJ_G0024219
protein coding gene Chr19:26894494-26938221 (+)
CBA/J MGP_CBAJ_G0024727
protein coding gene Chr19:29638001-29685253 (+)
DBA/2J MGP_DBA2J_G0024859
protein coding gene Chr19:26109881-26155982 (+)
FVB/NJ MGP_FVBNJ_G0024821
protein coding gene Chr19:25956428-26000603 (+)
LP/J MGP_LPJ_G0024944
protein coding gene Chr19:27538914-27584202 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024848
protein coding gene Chr19:29583907-29628268 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025489
protein coding gene Chr19:27123079-27165948 (+)
PWK/PhJ MGP_PWKPhJ_G0023967
protein coding gene Chr19:25769578-25809713 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023771
protein coding gene Chr19:26379265-26424461 (+)
WSB/EiJ MGP_WSBEiJ_G0024286
protein coding gene Chr19:27158272-27203950 (+)



Homology
more
  • Human Ortholog
    RCL1, RNA terminal phosphate cyclase like 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RCL1, RNA terminal phosphate cyclase like 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RNAC, RPCL1
  • Links
    NCBI Gene ID: 10171
    neXtProt AC: NX_Q9Y2P8
    UniProt: Q9Y2P8

  • Chr Location
    9p24.1; chr9:4792834-4861077 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024785 Ensembl Gene Model | MGI Sequence Detail 42469 C57BL/6J ±  kb
transcript ENSMUST00000064393 Ensembl | MGI Sequence Detail 1803 Not Applicable  
polypeptide ENSMUSP00000067579 Ensembl | MGI Sequence Detail 373 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000013837 RNA 3'-terminal phosphate cyclase-like protein
  • InterPro Domains
    IPR000228 RNA 3'-terminal phosphate cyclase
    IPR023797 RNA 3'-terminal phosphate cyclase domain
    IPR037136 RNA 3'-terminal phosphate cyclase domain superfamily
    IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
    IPR013791 RNA 3'-terminal phosphate cyclase, insert domain
    IPR036553 RNA 3'-terminal phosphate cyclase, insert domain superfamily
    IPR020719 RNA 3'-terminal phosphate cyclase-like, conserved site
    IPR016443 RNA 3'-terminal phosphate cyclase type 2
Molecular
Reagents
less
  • All nucleic 77
    cDNA 77

    Microarray probesets 3
Other
Accession IDs
less
MGI:1914206, MGI:2147594, MGI:2147775
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:255082 Kurogi S, et al., Development of an efficient screening system to identify novel bone metabolism-related genes using the exchangeable gene trap mutagenesis mouse models. Sci Rep. 2017 Jan 20;7:40692

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory