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Rcl1 Gene Detail
Summary
  • Symbol
    Rcl1
  • Name
    RNA terminal phosphate cyclase-like 1
  • Synonyms
    2310040A02Rik, Rnac, RPCL1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913275
    NCBI Gene: 59028
  • Gene Overview
    MyGene.info: RCL1
Location & Maps
more
  • Sequence Map
    Chr19:29101375-29143843 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      42469 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 23.61 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RCL1, RNA terminal phosphate cyclase like 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RCL1, RNA terminal phosphate cyclase like 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RNAC, RPCL1
  • Links
    NCBI Gene ID: 10171
    neXtProt AC: NX_Q9Y2P8

  • Chr Location
    9p24.1; chr9:4792834-4861077 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024785 Ensembl Gene Model | MGI Sequence Detail 42469 C57BL/6J ±  kb
transcript ENSMUST00000064393 Ensembl | MGI Sequence Detail 1803 Not Applicable  
polypeptide ENSMUSP00000067579 Ensembl | MGI Sequence Detail 373 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    549 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000013837 RNA 3'-terminal phosphate cyclase-like protein
  • InterPro Domains
    IPR000228 RNA 3'-terminal phosphate cyclase
    IPR023797 RNA 3'-terminal phosphate cyclase domain
    IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
    IPR013791 RNA 3'-terminal phosphate cyclase, insert domain
    IPR020719 RNA 3'-terminal phosphate cyclase-like, conserved site
    IPR016443 RNA 3'-terminal phosphate cyclase type 2
Molecular
Reagents
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  • All nucleic 76
    cDNA 76

    Microarray probesets 3
Other
Accession IDs
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MGI:1914206, MGI:2147594, MGI:2147775
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
  • Latest
    J:218306 Wang M, et al., Two orthogonal cleavages separate subunit RNAs in mouse ribosome biogenesis. Nucleic Acids Res. 2014;42(17):11180-91

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory