Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBMXL1
  • Mouse genes Rbmxl1
  • Rat genes Rbmxl1,Rbmxl1b
  • Zfish genes rbmx
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbmxl1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Rbmxl1	IDA		Mouse	MGI:MGI:5284748|PMID:19403048
Molecular Function	GO:0003682	chromatin binding	Rbmxl1	IDA		Mouse	MGI:MGI:3699031|PMID:17188681
Molecular Function	GO:0005515	protein binding	Rbmxl1	IPI	UniProtKB:D3YXK2	Mouse	MGI:MGI:5284748|PMID:19403048
Molecular Function	GO:0005515	protein binding	Rbmxl1	IPI	UniProtKB:P49760	Rat	PMID:19282290|RGD:2316827
Molecular Function	GO:0005515	protein binding	Rbmxl1	IPI	UniProtKB:P62995	Rat	PMID:19282290|RGD:2316827
Molecular Function	GO:0005515	protein binding	Rbmxl1	IPI	UniProtKB:Q15424	Rat	PMID:19282290|RGD:2316827
Molecular Function	GO:0005515	protein binding	Rbmxl1	IPI	UniProtKB:Q5VWX1	Rat	PMID:19282290|RGD:2316827
Molecular Function	GO:0005515	protein binding	Rbmxl1	IPI	UniProtKB:Q96MU7	Rat	PMID:19282290|RGD:2316827
Molecular Function	GO:0003723	RNA binding	Rbmxl1	IDA		Rat	PMID:19282290|RGD:2316827
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Rbmxl1	IDA		Mouse	MGI:MGI:3699031|PMID:17188681
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Rbmxl1	IDA		Mouse	MGI:MGI:5284748|PMID:19403048
Cellular Component	GO:0005634	nucleus	Rbmxl1	IDA		Mouse	PMID:10716735
Cellular Component	GO:0044530	supraspliceosomal complex	Rbmxl1	IDA		Rat	PMID:19282290|RGD:2316827
Biological Process	GO:0006376	mRNA splice site selection	Rbmxl1	IDA		Rat	PMID:19282290|RGD:2316827
Biological Process	GO:0048025	negative regulation of mRNA splicing, via spliceosome	Rbmxl1	IDA		Rat	PMID:15009664|RGD:8554197
Biological Process	GO:0048026	positive regulation of mRNA splicing, via spliceosome	Rbmxl1	IDA		Rat	PMID:19282290|RGD:2316827
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rbmxl1	IMP		Mouse	MGI:MGI:5284748|PMID:19403048
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rbmxl1	IDA		Mouse	MGI:MGI:3699031|PMID:17188681
Biological Process	GO:0051260	protein homooligomerization	Rbmxl1	IDA		Rat	PMID:19282290|RGD:2316827
Biological Process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	Rbmxl1	IDA		Rat	PMID:19282290|RGD:2316827

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern