Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBM8A
  • Mouse genes Rbm8a2
  • Rat genes Rbm8a
  • Zfish genes rbm8a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbm8a2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	rbm8a	IDA		Zfish	PMID:32502192
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:10662555
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BZI7	Human	PMID:11546873
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9H1J1	Human	PMID:11546873
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BZI7	Human	PMID:11546874
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9H1J1	Human	PMID:11546874
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:12730685
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:12781131
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P38919	Human	PMID:14730019
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:14730019
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q96A72	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P38919	Human	PMID:16209946
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:16209946
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BZI7	Human	PMID:16209946
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BZI7	Human	PMID:16452507
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P38919	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BZI7	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BRP8	Human	PMID:18026120
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P38919	Human	PMID:19410547
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:19410547
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BRP8	Human	PMID:19410547
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P38919	Human	PMID:19417104
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:19417104
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P38919	Human	PMID:23084401
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:23084401
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q9BZI7	Human	PMID:23084401
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P78362	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q96SB4	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q96A72	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q96A72	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:29997244
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q96A72	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:Q99081-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM8A	IPI	UniProtKB:P61326	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Rbm8a	IPI	RGD:1597384	Rat	PMID:15970630|RGD:9999195
Molecular Function	GO:0005515	protein binding	Rbm8a	IPI	RGD:621479	Rat	PMID:15970630|RGD:9999195
Molecular Function	GO:0003723	RNA binding	RBM8A	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	RBM8A	IDA		Human	PMID:11991638
Cellular Component	GO:0030425	dendrite	Rbm8a	IDA		Rat	PMID:15970630|RGD:9999195
Cellular Component	GO:0035145	exon-exon junction complex	RBM8A	IPI		Human	PMID:16931718
Cellular Component	GO:0035145	exon-exon junction complex	RBM8A	IDA		Human	PMID:16601204
Cellular Component	GO:0035145	exon-exon junction complex	RBM8A	IDA		Human	PMID:18026120
Cellular Component	GO:0035145	exon-exon junction complex	RBM8A	IDA		Human	PMID:19410547
Cellular Component	GO:0035145	exon-exon junction complex	rbm8a	IDA		Zfish	PMID:32502192
Cellular Component	GO:1990501	exon-exon junction subcomplex mago-y14	RBM8A	IPI		Human	PMID:12781131
Cellular Component	GO:1990501	exon-exon junction subcomplex mago-y14	RBM8A	IPI		Human	PMID:25416956
Cellular Component	GO:0043025	neuronal cell body	Rbm8a	IDA		Rat	PMID:15970630|RGD:9999195
Cellular Component	GO:0016607	nuclear speck	RBM8A	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	RBM8A	IDA		Human	PMID:29301961
Cellular Component	GO:0005634	nucleus	Rbm8a	IDA		Rat	PMID:15970630|RGD:9999195
Cellular Component	GO:0071006	U2-type catalytic step 1 spliceosome	RBM8A	IDA		Human	PMID:29301961
Biological Process	GO:0000398	mRNA splicing, via spliceosome	RBM8A	IDA		Human	PMID:29301961
Biological Process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	RBM8A	IMP		Human	PMID:16209946
Biological Process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	RBM8A	IMP		Human	PMID:22203037
Biological Process	GO:0010468	regulation of gene expression	rbm8a	IMP	ZFIN:ZDB-GENO-210908-1	Zfish	PMID:32502192
Biological Process	GO:0050684	regulation of mRNA processing	RBM8A	IDA		Human	PMID:23115303
Biological Process	GO:2000622	regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	RBM8A	IDA		Human	PMID:19478851

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern