Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBFOX1
  • Mouse genes Rbfox1
  • Rat genes Rbfox1
  • Zfish genes rbfox1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbfox1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003730	mRNA 3'-UTR binding	Rbfox1	IDA		Mouse	PMID:27378374
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:Q99700	Human	PMID:10814712
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:O43251	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:P54253	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:P54259	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:Q92530	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:Q96PU8	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:Q9HAU0	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:Q9Y6R0	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:Q6P1W5	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBFOX1	IPI	UniProtKB:Q93062	Human	PMID:25416956
Molecular Function	GO:0003723	RNA binding	Rbfox1	IDA		Mouse	PMID:27378374
Cellular Component	GO:0005737	cytoplasm	RBFOX1	IDA		Human	PMID:10814712
Cellular Component	GO:0005737	cytoplasm	Rbfox1	IDA		Mouse	PMID:22357600
Cellular Component	GO:0010494	cytoplasmic stress granule	RBFOX1	IDA		Human	PMID:29358748
Cellular Component	GO:0097165	nuclear stress granule	RBFOX1	IDA		Human	PMID:29358748
Cellular Component	GO:0005634	nucleus	Rbfox1	IDA		Mouse	PMID:22357600
Cellular Component	GO:0005634	nucleus	Rbfox1	IDA		Mouse	PMID:21177649
Cellular Component	GO:0005802	trans-Golgi network	RBFOX1	IDA		Human	PMID:10814712
Biological Process	GO:0060047	heart contraction	rbfox1	IMP	ZFIN:ZDB-MRPHLNO-151229-1	Zfish	PMID:26116573
Biological Process	GO:0060047	heart contraction	rbfox1	IMP	ZFIN:ZDB-MRPHLNO-151216-8	Zfish	PMID:26116573
Biological Process	GO:0021854	hypothalamus development	rbfox1	IMP	ZFIN:ZDB-MRPHLNO-071221-8	Zfish	PMID:18077674
Biological Process	GO:0021854	hypothalamus development	rbfox1	IMP	ZFIN:ZDB-MRPHLNO-071221-7	Zfish	PMID:18077674
Biological Process	GO:0050885	neuromuscular process controlling balance	Rbfox1	IGI	MGI:MGI:1933973	Mouse	PMID:22357600
Biological Process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	Rbfox1	IMP		Mouse	PMID:23300487
Biological Process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	rbfox1	IMP	ZFIN:ZDB-MRPHLNO-151216-8	Zfish	PMID:26116573
Biological Process	GO:0043484	regulation of RNA splicing	rbfox1	IMP	ZFIN:ZDB-MRPHLNO-151216-8	Zfish	PMID:26116573
Biological Process	GO:2001014	regulation of skeletal muscle cell differentiation	Rbfox1	IMP		Mouse	PMID:23349951

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern