Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RAB3D
  • Mouse genes Rab3d
  • Rat genes Rab3d
  • Zfish genes rab3da,rab3db
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rab3d

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030742	GTP-dependent protein binding	Rab3d	IPI	PR:P35276	Mouse	PMID:21262767
Molecular Function	GO:0031489	myosin V binding	RAB3D	IPI	UniProtKB:Q9Y4I1	Human	PMID:24006491
Molecular Function	GO:0005515	protein binding	RAB3D	IPI	UniProtKB:P47224	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RAB3D	IPI	UniProtKB:Q96C24	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RAB3D	IPI	UniProtKB:Q96QF0-7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RAB3D	IPI	UniProtKB:Q9H8Y1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	UniProtKB:Q768S4	Mouse	MGI:MGI:3653776|PMID:11598194
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	PR:Q99NE5	Mouse	PMID:12578829
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	MGI:MGI:1923492	Mouse	PMID:12578829
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	PR:P35276	Mouse	PMID:21262767
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	PR:Q9EQZ7	Mouse	PMID:12578829
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	PR:Q768S4	Mouse	PMID:15159548
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	RGD:620650	Rat	PMID:7532276|RGD:633748
Molecular Function	GO:0005515	protein binding	Rab3d	IPI	UniProtKB:Q62739	Rat	PMID:7532276|RGD:633748
Cellular Component	GO:0005881	cytoplasmic microtubule	RAB3D	IDA		Human	PMID:21262767
Cellular Component	GO:0070062	extracellular exosome	RAB3D	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	RAB3D	HDA		Human	PMID:23533145
Cellular Component	GO:0005739	mitochondrion	Rab3d	HDA		Mouse	PMID:18614015
Cellular Component	GO:0099503	secretory vesicle	RAB3D	IDA		Human	PMID:21262767
Cellular Component	GO:0030133	transport vesicle	Rab3d	IDA		Rat	PMID:14578858|RGD:1304451
Cellular Component	GO:0042588	zymogen granule	Rab3d	IDA		Mouse	PMID:12192047
Biological Process	GO:0045453	bone resorption	RAB3D	IDA		Human	PMID:21262767
Biological Process	GO:0018125	peptidyl-cysteine methylation	Rab3d	IDA		Mouse	PMID:11121396
Biological Process	GO:1903307	positive regulation of regulated secretory pathway	RAB3D	IMP		Human	PMID:22899725
Biological Process	GO:0017157	regulation of exocytosis	Rab3d	IDA		Mouse	PMID:12167638

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern