Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RAB3B
  • Mouse genes Rab3b
  • Rat genes Rab3b
  • Zfish genes rab3b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rab3b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019003	GDP binding	RAB3B	IDA		Human	PMID:22321395
Molecular Function	GO:0030742	GTP-dependent protein binding	Rab3b	IPI	PR:P35276	Mouse	PMID:21262767
Molecular Function	GO:0003924	GTPase activity	RAB3B	IDA		Human	PMID:24891604
Molecular Function	GO:0031489	myosin V binding	RAB3B	IPI	UniProtKB:Q9Y4I1	Human	PMID:24006491
Molecular Function	GO:0005515	protein binding	RAB3B	IPI	UniProtKB:Q15042	Human	PMID:24891604
Molecular Function	GO:0005515	protein binding	RAB3B	IPI	UniProtKB:P47224	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RAB3B	IPI	UniProtKB:Q9H8Y1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rab3b	IPI	UniProtKB:Q768S4	Mouse	MGI:MGI:3653776|PMID:11598194
Molecular Function	GO:0005515	protein binding	Rab3b	IPI	PR:Q9EQZ7	Mouse	PMID:12578829
Molecular Function	GO:0005515	protein binding	Rab3b	IPI	PR:Q768S4	Mouse	PMID:12578829
Molecular Function	GO:0005515	protein binding	Rab3b	IPI	PR:Q768S4	Mouse	PMID:15159548
Molecular Function	GO:0005515	protein binding	Rab3b	IPI	PR:Q99NE5	Mouse	PMID:12578829
Cellular Component	GO:0005737	cytoplasm	RAB3B	IDA		Human	PMID:20807725
Cellular Component	GO:0005829	cytosol	Rab3b	IDA		Rat	PMID:8366094|RGD:2306265
Cellular Component	GO:0098691	dopaminergic synapse	RAB3B	IDA		Human	PMID:20007772
Cellular Component	GO:0098691	dopaminergic synapse	RAB3B	IMP		Human	PMID:20007772
Cellular Component	GO:0070062	extracellular exosome	RAB3B	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	RAB3B	HDA		Human	PMID:23533145
Cellular Component	GO:0048471	perinuclear region of cytoplasm	RAB3B	IDA		Human	PMID:19717423
Cellular Component	GO:0030141	secretory granule	Rab3b	IDA		Mouse	MGI:MGI:3689791|PMID:16043482
Cellular Component	GO:0008021	synaptic vesicle	Rab3b	IDA		Mouse	PMID:12167638
Cellular Component	GO:0008021	synaptic vesicle	Rab3b	IDA		Mouse	PMID:12192047
Cellular Component	GO:0030672	synaptic vesicle membrane	RAB3B	IDA		Human	PMID:20007772
Cellular Component	GO:0030672	synaptic vesicle membrane	RAB3B	IMP		Human	PMID:20007772
Cellular Component	GO:0030672	synaptic vesicle membrane	Rab3b	EXP		Rat	PMID:17110340|RGD:12050113
Cellular Component	GO:0030672	synaptic vesicle membrane	Rab3b	IDA		Rat	PMID:17110340|RGD:12050113
Cellular Component	GO:0030672	synaptic vesicle membrane	Rab3b	IDA		Rat	PMID:20926670|RGD:13432355
Cellular Component	GO:0031982	vesicle	RAB3B	IDA		Human	PMID:19717423
Biological Process	GO:0019882	antigen processing and presentation	RAB3B	IMP		Human	PMID:19717423
Biological Process	GO:0018125	peptidyl-cysteine methylation	Rab3b	IDA		Mouse	PMID:11121396
Biological Process	GO:0051586	positive regulation of dopamine uptake involved in synaptic transmission	RAB3B	IDA		Human	PMID:20007772
Biological Process	GO:0017157	regulation of exocytosis	Rab3b	IDA		Mouse	PMID:12167638
Biological Process	GO:0098693	regulation of synaptic vesicle cycle	RAB3B	IDA		Human	PMID:20007772
Biological Process	GO:0098693	regulation of synaptic vesicle cycle	RAB3B	IMP		Human	PMID:20007772
Biological Process	GO:0097494	regulation of vesicle size	RAB3B	IDA		Human	PMID:20007772

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern